View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_20 (Length: 297)
Name: NF2126_low_20
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 33984292 - 33984557
Alignment:
| Q |
20 |
ccttttacagtcttgaaatatggtacagcacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggta |
119 |
Q |
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| T |
33984292 |
ccttttacagtcttgaaatatggtacaacacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggta |
33984391 |
T |
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| Q |
120 |
ccacatttcatttctaattcatattcttacttttacatttgcttcaatttagtactaagggacaaaatcgccatggtttttaatgtttaaactaatttat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33984392 |
ccacatttcatttctaattcatattcttacttttacatttgcttcaatttagtactaagggacaaaatcgccatggtttttaatgtttaaactaatttat |
33984491 |
T |
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| Q |
220 |
tgatttaatcaaattatcattttttgcagcctcaacatcaatggcttggaaacgatgatagcccta |
285 |
Q |
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| T |
33984492 |
tgatttaatcaaattatcattttttgcagcctcaacatcaatggcttggaaacgatgatagcccta |
33984557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 33993859 - 33993958
Alignment:
| Q |
21 |
cttttacagtcttgaaatatggtacagcacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggtac |
120 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||| |
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| T |
33993859 |
ctttgacagtcttgaaatatggtacaacacagttttgattcttctaacagggaacatggaaaatgctgagatttccattgatgctcttgctatatggtac |
33993958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 33994015 - 33994093
Alignment:
| Q |
205 |
tttaaactaatttattgatttaatcaaattatcattttttgcagcctcaacatcaatggcttggaaacgatgatagccct |
284 |
Q |
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| T |
33994015 |
tttaaactaatctattgacttaatcaaattattatttt-tgcagcctcaacatcaatgggtgggaaatgatgatagccct |
33994093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 34016093 - 34016190
Alignment:
| Q |
22 |
ttttacagtcttgaaatatggtacagcacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggta |
119 |
Q |
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|||| ||||||||| ||||||||| ||| || ||||||||| ||||||| |||||||||||||| |||||| || ||||||||| |||||||||| |
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| T |
34016093 |
ttttgcagtcttgagctatggtacaacacggtattgattcttttaacaggcaacatggaaaatgcagagattcaaattgatgctctagccatatggta |
34016190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 9236551 - 9236452
Alignment:
| Q |
20 |
ccttttacagtcttgaaatatggtacagcacagttttgattcttctaacaggaaacatggaaaatgctgagatttccatagatgctctatccatatggta |
119 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||| |||| || |||||| || |||||||| || || | || |||| ||||||||||| |
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| T |
9236551 |
ccttttacagtcttgaggtatggtacagcacaattttgattcttttaactggcaacatgaaagatgctgaggttgcccttaattctctgtccatatggta |
9236452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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