View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_22 (Length: 252)
Name: NF2126_low_22
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_22 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 7067 - 7268
Alignment:
| Q |
34 |
tctggttcagaatgatgaaaaaggaaccaattgagataaatgaaatactatagactcaataatagnnnnnnnnnnnnnnntgtttatgaatttgatagac |
133 |
Q |
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| T |
7067 |
tctggttcagaatgatgaaaaaggaaccaattgagataaatgaaatactatagactcaataatagaaaaaaaattaaaaatgattatgaatttgatagac |
7166 |
T |
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| Q |
134 |
tcaaatataaataaagagcggtgtgttaaggagtatgttggatgtagcatgaaacacttgtgtaataata-gcaaagagcaaaatcacatttgacagaaa |
232 |
Q |
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| T |
7167 |
tcaaatataaataaagagcggtttgttaaggagtatgttggatgtagcatgaaacacttgtgtaataataggcaaagagcaaaatcacatttgacagaaa |
7266 |
T |
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| Q |
233 |
ac |
234 |
Q |
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|| |
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| T |
7267 |
ac |
7268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 11053 - 11094
Alignment:
| Q |
32 |
tttctggttc-agaatgatgaaaaaggaaccaattgagataa |
72 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||| |
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| T |
11053 |
tttctggttccagaatgatgaaaaaggcaccaattgagataa |
11094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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