View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_24 (Length: 248)
Name: NF2126_low_24
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_24 |
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| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 7525012 - 7525081
Alignment:
| Q |
78 |
caaagattttagaggcagttttgatagaatggagaatgtaaaatcatcaggtaagtgattgctaaccttt |
147 |
Q |
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| T |
7525012 |
caaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtatgtgattgctaaccttt |
7525081 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 7436186 - 7436254
Alignment:
| Q |
78 |
caaagattttagaggcagttttgatagaatggagaatgtaaaatcatcaggtaagtgattgctaacctt |
146 |
Q |
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| T |
7436186 |
caaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtatgtgattgctaacctt |
7436254 |
T |
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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 7519734 - 7519697
Alignment:
| Q |
78 |
caaagattttagaggcagttttgatagaatggagaatg |
115 |
Q |
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| T |
7519734 |
caaagattttagaggcagttttgatagaatgaagaatg |
7519697 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 367983 - 367931
Alignment:
| Q |
58 |
cgtacacatctaaatcgaaccaaagattttagaggcagttttgatagaatgga |
110 |
Q |
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| T |
367983 |
cgtacacatttaaatcgagtcaaagattttagaggcagttttgacataatgga |
367931 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 54295988 - 54296039
Alignment:
| Q |
79 |
aaagattttagaggcagttttgatagaatggagaatgtaaaatcatcaggta |
130 |
Q |
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| T |
54295988 |
aaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggta |
54296039 |
T |
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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 18048 - 18118
Alignment:
| Q |
78 |
caaagattttagaggcagttttgatagaatggagaatgtaaaatcatcaggtaagtgattgctaacctttt |
148 |
Q |
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| T |
18048 |
caaagatttaagaggcagtttggacagaatggaaaatgcaagatcatcatgaatatgattgctaacctttt |
18118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 34446 - 34514
Alignment:
| Q |
80 |
aagattttagaggcagttttgatagaatggagaatgtaaaatcatcaggtaagtgattgctaacctttt |
148 |
Q |
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| T |
34446 |
aagatttaagaggcaattttgatagaatgaaaaatgcaagatcatcatgaatatgattgctaacctttt |
34514 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 29123275 - 29123227
Alignment:
| Q |
79 |
aaagattttagaggcagttttgatagaatggagaatgtaaaatcatcag |
127 |
Q |
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| T |
29123275 |
aaagatttaagaggcaattttgatagaatggagaaggcaatatcatcag |
29123227 |
T |
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