View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_26 (Length: 244)
Name: NF2126_low_26
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 29361574 - 29361453
Alignment:
| Q |
109 |
aaaactcatcggtttgaaaacagcgtcagtcaaaacagccatgcttgataatgcaaattgttgattgattgtttaatatttatttagatcaacaaaccca |
208 |
Q |
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| T |
29361574 |
aaaactcatcggttggaaaacagcgtcagtcaaaacagccatgcttgataatgcaaattgttgatggattgtttaatatttatttagatcaacaaaccca |
29361475 |
T |
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| Q |
209 |
tgttgatgttgcatgattttga |
230 |
Q |
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| T |
29361474 |
tgttgatgttgcatgattttga |
29361453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 29361816 - 29361780
Alignment:
| Q |
20 |
aatttggtatcttaaatggtaagaaaacgtatcgagt |
56 |
Q |
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| T |
29361816 |
aatttggtatcttaaatggtaagaaaacgtatcgagt |
29361780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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