View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_27 (Length: 241)
Name: NF2126_low_27
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_27 |
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| [»] scaffold0281 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31897125 - 31896894
Alignment:
| Q |
1 |
atgaacatttctgccatatccaaacaccaaaaataaa-tgaatgcaatgctcatctttactcgttaaacnnnnnnnnnnn------acgaaaatgcacaa |
93 |
Q |
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| T |
31897125 |
atgaacatttctgccatatccaaacaccaaaaataaaatgaatgcaatgctcatctttacccgttaaacttacttgtttttttttaacgaaaatgcacaa |
31897026 |
T |
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| Q |
94 |
aatcctnnnnnnnn--tgaaatgagaagaaatctccacattctctgnnnnnnngtaatgattgattttttctttgaaataatggaagtagtgaaacaaaa |
191 |
Q |
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| T |
31897025 |
aatcctccaaaaaaaatgaaatgaaaagaattctccacattgtctgtttttttgtaatgattgattttttctttgaaataatggaagtagtgaaacaaaa |
31896926 |
T |
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| Q |
192 |
gtttcaaacaccgacactaatgaaaaggtaat |
223 |
Q |
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| T |
31896925 |
gtttcaaacaccgacactaatggaaaggtaat |
31896894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 21086 - 21008
Alignment:
| Q |
145 |
gtaatgattgattttttctttgaaataatggaagtagtgaaacaaaagtttcaaacaccgacactaatgaaaaggtaat |
223 |
Q |
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| T |
21086 |
gtaatgattgattttttctttgaaataatggaagtagtgaaacaaaagtttcaaacaccgacactaatggaaaggtaat |
21008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3131 - 3063
Alignment:
| Q |
1 |
atgaacatttctgccatatccaaacaccaaaaat-aaatgaatgcaatgctcatctttactcgttaaac |
68 |
Q |
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| T |
3131 |
atgaacatttctgccatatccaaacaccaaaaataaaatgaatgcaatgctcatctttacccgttaaac |
3063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 21238 - 21170
Alignment:
| Q |
1 |
atgaacatttctgccatatccaaacaccaaaaat-aaatgaatgcaatgctcatctttactcgttaaac |
68 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
21238 |
atgaacatttatgccatatccaaacaccaaaaataaaatgaatgcaatgctcatctttatccgttaaac |
21170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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