View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_28 (Length: 239)
Name: NF2126_low_28
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 10028023 - 10028240
Alignment:
| Q |
4 |
tatcttaacttgttaaattttcaatcaatggtgaatgaaacactatgtaaatgtgttgatttataattttccggatagtagaacatgaagattttcacaa |
103 |
Q |
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| T |
10028023 |
tatcttaacttgttaaattttcaataaatggtgaatgaaacactatgtagatgtgttgatttataattttccggatagtagaacatgaagattttcacaa |
10028122 |
T |
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| Q |
104 |
ttaattttaatttatgtgcttacttttgttacatcacttgcttgaataattatgaaatatatatgcttaatggcatattcaattcatgtggtgatagagg |
203 |
Q |
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| T |
10028123 |
ttaattttaatttatgtgcttacttttgttacatcacttgcttgaataattatgaaatatgtatgcttaatggcatattcaattcatgtggtgatagagg |
10028222 |
T |
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| Q |
204 |
tagcagggtggcttcctt |
221 |
Q |
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| T |
10028223 |
tagcagggtggcttcctt |
10028240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 10047876 - 10047986
Alignment:
| Q |
5 |
atcttaacttgttaaattttcaatcaatggtgaatgaaacactatgtaaatgtgttgatttataattttccggatagtagaacatgaagattttcacaat |
104 |
Q |
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| T |
10047876 |
atcttaacttgttagattttcaatcaatggtgaatgaaacactatgtagatgtgttgatttaatattttccggatagtagaacatgaagattttcacaat |
10047975 |
T |
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| Q |
105 |
taattttaatt |
115 |
Q |
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| T |
10047976 |
taattttaatt |
10047986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 10062239 - 10062319
Alignment:
| Q |
141 |
ttgcttgaataattatgaaatatatatgcttaatggcatattcaattcatgtggtgatagaggtagcagggtggcttcctt |
221 |
Q |
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| T |
10062239 |
ttgcttgaagaattatgaaatttatatgcttcatttcatactcaattcatatggtgatagaggtagcagtgtggcttcctt |
10062319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 10062053 - 10062148
Alignment:
| Q |
11 |
acttgttaaattttcaatcaatggtgaatgaaacactatgtaaatgtgttgatttataattttccggatagtagaacatgaagattttcacaatta |
106 |
Q |
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| T |
10062053 |
acttgttaaatttttgagtaatgatgaatgacacactaagtagatgttttgatttataactttccggatagttgaacaggaggattttcccaatta |
10062148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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