View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_29 (Length: 228)
Name: NF2126_low_29
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 10679975 - 10680181
Alignment:
| Q |
1 |
agcattataagaatattaaacatattatcgaggagacaaaatcataaagtcgtgcaatcagaactaagggctaaatataaagatgactgcttcatattaa |
100 |
Q |
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| T |
10679975 |
agcattataagaaaattaaacatattatcgaggagacaaaatcataaagtcgtgcaatcagaactaagggctaaatataaagatgactgcttcatattaa |
10680074 |
T |
|
| Q |
101 |
aggaagacattaccttgtagaaagacctttagttaaactgttgtggctcactccaccacagagtgcagcaatgtaatcataccttgaaccattcaaatat |
200 |
Q |
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| T |
10680075 |
aggaagacattaccttgtagaaggacctttagttaaactgttgtggctcactccaccacagagtgcagcaatgtaatcataccttgaaccattcaaatat |
10680174 |
T |
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| Q |
201 |
taacaag |
207 |
Q |
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||||||| |
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| T |
10680175 |
taacaag |
10680181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 7517270 - 7517124
Alignment:
| Q |
60 |
agaactaagggctaaatataaagatgactgcttcatattaaaggaagacattaccttgtagaaagacctttagttaaactgttgtggctcactccaccac |
159 |
Q |
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|||| ||||||| ||| ||||||| ||| ||||| ||||||||||| |||||||||| ||||| ||||||||| |||| ||||| |||||||||| || |
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| T |
7517270 |
agaaataagggcaaaaaataaagacgaccgcttc-tattaaaggaaaacattaccttttagaaggacctttagctaaagtgttgctgctcactccaggac |
7517172 |
T |
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| Q |
160 |
agagtgcagcaatgtaatcataccttgaaccattcaaatattaacaag |
207 |
Q |
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| T |
7517171 |
atagtgtagcaatgtagtcataccttgaaccattcaaatattgacaag |
7517124 |
T |
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