View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2126_low_3 (Length: 610)
Name: NF2126_low_3
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Complemental strand, 41524578 - 41523999
Alignment:
| Q |
18 |
caagaaagttatgaagctcttttgaaagaagttaaggtgaatagattagctaatagtgagaagaagaatgaattagaggaggaagttgagaagttgaaga |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524578 |
caagaaagttatgaagctcttttgaaagaagttaaggtgaatagattagctaatagtgagaagaagaatgaattagaggaggaagttgagaagttgaaga |
41524479 |
T |
|
| Q |
118 |
aaaaatatgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagctagaggctaagattttggagttgaggaagttgaatgaaaagag |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524478 |
aaaaatatgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagctagaggctaagattttggagttgaggaagttgaatgaaaagag |
41524379 |
T |
|
| Q |
218 |
gatggaggataataatgaacttggtgtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaatcgaagaagaaatggttagat |
317 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41524378 |
gatggaggataatactcaacttggtgtgttgagaaaaatgattggtaaattggagcatgaagcttcggagctgaggaaatcgaagaagaaatggttagat |
41524279 |
T |
|
| Q |
318 |
gatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatggcgaagtgaagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524278 |
gatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggcgataaaaatgttttggctggagttgaggttagaaatggcgaagtgaagg |
41524179 |
T |
|
| Q |
418 |
aaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatgagaaacgtaagattgagatattgcttgggtctat |
517 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41524178 |
aaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatgagaaacgtaagattgagatattgctcgggtctat |
41524079 |
T |
|
| Q |
518 |
gtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaatcttttgaagagtgtaggtgtct |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524078 |
gtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaatcttttgaagagtgtaggtgtct |
41523999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 41515648 - 41515051
Alignment:
| Q |
18 |
caagaaagttatgaagctcttttgaaagaagttaaggtgaatagattagctaatagtga---------------------gaagaagaatgaattagagg |
96 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| | ||| || |||| |
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| T |
41515648 |
caagaaagttatgaagcacttttgaaagaagttaaggtgaatggattagctaatagtgatactattgaagagctaagtaggaagaaaattgatttggagg |
41515549 |
T |
|
| Q |
97 |
aggaagttgagaagttgaagaaaaaatatgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagctagaggctaagattttggagtt |
196 |
Q |
| |
|
|||||||| ||||||||| | |||| | ||||||||||| |||||||| ||||||||||||||||||||||||| ||||| || | ||||||||||| |
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|
| T |
41515548 |
tagaagttgaaaagttgaaggagaaatgttttgatggtagcaatgaaatttatgtgttaagaagaaagaatggtgaattagagtctgaaattttggagtt |
41515449 |
T |
|
| Q |
197 |
gaggaagttgaatgaaaagaggatggaggataataatgaacttggtgtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41515448 |
gaggaagttgaatgaaaagaggatgggggataataatgaacttggtgtattgaggaaaatgattggtaaattggagcatgaagtttcggagttgaggaaa |
41515349 |
T |
|
| Q |
297 |
tcgaagaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgagg |
396 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |
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|
| T |
41515348 |
tcgaagaagaaatggttagatgatggcaatgcttttgatgcgcttagaaataaggttcgtgtattggagggtgataagaatgctttggctggggttgagg |
41515249 |
T |
|
| Q |
397 |
ttagaaatggcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatgagaaacgtaagat |
496 |
Q |
| |
|
||| |||||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41515248 |
ttaaaaatggcgaattgaaggaaatagtgaagaaatataaggaaactataagtaggttggggaaagaaaagagtaagttggctgatgagaaacgtaagat |
41515149 |
T |
|
| Q |
497 |
tgagatattgcttgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaatcttttgaagagtgtaggtg |
594 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
41515148 |
tgagatattgcttgggtctatgtacaaaaagtttaaaggactgcttggaagactttcggggttggaggatgataccaaacttttgaagagtgtaggtg |
41515051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 76 - 447
Target Start/End: Complemental strand, 41499760 - 41499389
Alignment:
| Q |
76 |
agaagaagaatgaattagaggaggaagttgagaagttgaagaaaaaatatgttgatggtagctatgaaattgatgtgttaagaagaaagaatggtgagct |
175 |
Q |
| |
|
||||||| |||||| |||||| |||||| ||| |||||| | ||| ||||||||||||| ||||| ||| ||||||||||| ||||| || ||| | |
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|
| T |
41499760 |
agaagaacaatgaactagaggttgaagttatgaatttgaaggagaaacttgttgatggtagcaatgaagttggtgtgttaagaacaaagattgttgaatt |
41499661 |
T |
|
| Q |
176 |
agaggctaagattttggagttgaggaagttgaatgaaaagaggatggaggataataatgaacttggtgtgttgagaaaaatgattggtaaattggagcat |
275 |
Q |
| |
|
||| || | ||||||||||||||||| || |||||||||| | ||||||||||||||||||||| |||| | ||| |||||||||||||||| |||||| |
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|
| T |
41499660 |
agaatctgaaattttggagttgaggaaattaaatgaaaagatgctggaggataataatgaacttgttgtgctaagagaaatgattggtaaattagagcat |
41499561 |
T |
|
| Q |
276 |
gaagtttcggagctgaggaaatcgaagaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaa |
375 |
Q |
| |
|
||||||| |||| ||||||| | |||||| |||||||| ||||||||||||||| ||||| | | | | |||||||||||| ||||||||||||| | |
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|
| T |
41499560 |
gaagttttggagttgaggaagttgaagaaaaaatggtttgatgatagcaatgctcatgatgaggtacgaagcaaggttcgtgtaatggagggtgataaga |
41499461 |
T |
|
| Q |
376 |
atgttttggctggagttgaggttagaaatggcgaagtgaaggaaacggtgaagaaaattttggaaactataa |
447 |
Q |
| |
|
||| |||||||||| || || || || ||| ||| |||||||||| ||||||| | |||||||||||||| |
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|
| T |
41499460 |
atgatttggctggacttaagattgaaactggtgaattgaaggaaacaatgaagaagaatttggaaactataa |
41499389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 142 - 447
Target Start/End: Complemental strand, 41503887 - 41503582
Alignment:
| Q |
142 |
aaattgatgtgttaagaagaaagaatggtgagctagaggctaagattttggagttgaggaagttgaatgaaaagaggatggaggataataatgaacttgg |
241 |
Q |
| |
|
||||||||||||||||||| |||| |||| | |||||| || | |||||||||||||||| || |||||||||| | ||||||||||||| ||||||| |
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|
| T |
41503887 |
aaattgatgtgttaagaagtaagactggtaaactagagtctgaagttttggagttgaggaaattaaatgaaaagatggtggaggataataacgaacttgt |
41503788 |
T |
|
| Q |
242 |
tgtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaatcgaagaagaaatggttagatgatagcaatgcttttgatgcgctt |
341 |
Q |
| |
|
|||| | ||| |||||||||||||||| ||||||||||||| |||| | |||| | |||||| |||| |||||| |||||| |||| ||||| |||| |
|
|
| T |
41503787 |
tgtgctaagagaaatgattggtaaattagagcatgaagttttggagttaaggaggttgaagaaaaaattgttagaaaatagcagtgctcatgatgagctt |
41503688 |
T |
|
| Q |
342 |
aggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatggcgaagtgaaggaaacggtgaagaaaattttggaaa |
441 |
Q |
| |
|
| | ||||||| ||| |||||||||||||||||| |||||||| || || ||| || ||| ||| |||||||||| ||||||| | |||||||| |
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|
| T |
41503687 |
cgaagcaaggttcatgttctggagggtgataaaaatgatttggctgaccttaagattaaaactggtgaattgaaggaaacaatgaagaagaatttggaaa |
41503588 |
T |
|
| Q |
442 |
ctataa |
447 |
Q |
| |
|
|||||| |
|
|
| T |
41503587 |
ctataa |
41503582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 421
Target Start/End: Complemental strand, 41519439 - 41519327
Alignment:
| Q |
309 |
tggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatggcg |
408 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||| | | | |||| |||||||||||| ||| || |||| |||||||||| ||||| ||| |||||||| |
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|
| T |
41519439 |
tggttagatgatagtaatgctcttgatgagcttcgaagcatggttggtgtattggaggttgaaaagaatgctttggctggaattgagattaaaaatggcg |
41519340 |
T |
|
| Q |
409 |
aagtgaaggaaac |
421 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
41519339 |
aattgaaggaaac |
41519327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 41469924 - 41469877
Alignment:
| Q |
19 |
aagaaagttatgaagctcttttgaaagaagttaaggtgaatagattag |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41469924 |
aagaaagttatgaagctcttttgaaagaagttaaggtaaatagattag |
41469877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 483
Target Start/End: Complemental strand, 41504074 - 41503897
Alignment:
| Q |
306 |
aaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatg |
405 |
Q |
| |
|
|||||||| |||||||| |||||| |||||| |||| | |||||| |||||||||||| ||| ||||||| |||||||| | || || || |||| |
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|
| T |
41504074 |
aaatggtttgatgatagaaatgctcttgatgagcttcaaaggaaggttggtgtattggaggatgaaaaaaatgatttggctgaaattaagagtaaaaata |
41503975 |
T |
|
| Q |
406 |
gcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatg |
483 |
Q |
| |
|
||||| |||||| ||| |||| ||| ||||| |||||||| |||| |||||||||| || || |||||||||| |
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|
| T |
41503974 |
gcgaattgaaggcaactgtgacgaagtatttggcaactataagcgagttgaggaaagaaaacagcaaattggctgatg |
41503897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 571
Target Start/End: Complemental strand, 41503548 - 41503473
Alignment:
| Q |
496 |
ttgagatattgcttgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgatac |
571 |
Q |
| |
|
|||| ||||| ||||||||| | ||||| ||||| ||||||||| ||||||| |||| || |||||||||||||| |
|
|
| T |
41503548 |
ttgatatattacttgggtctttttacaaaaagttcagaggactgactggaagagtttcaaggttggaggatgatac |
41503473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 41702837 - 41702966
Alignment:
| Q |
139 |
atgaaattgatgtgttaagaagaaagaatggtgagctagaggctaagattttggagttgaggaagttgaatgaaaagaggatggaggataataatgaact |
238 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||| ||||| | | |||||||||||| |||||| || |||| || ||| ||| ||| |||| | |
|
|
| T |
41702837 |
atgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaagaaaaaatgggaggaagatgatattgaatt |
41702936 |
T |
|
| Q |
239 |
tggtgtgttgagaaaaatgattggtaaatt |
268 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |
|
|
| T |
41702937 |
gggtgtgttaagaaaaatgattggtgaatt |
41702966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41702761 - 41702805
Alignment:
| Q |
18 |
caagaaagttatgaagctcttttgaaagaagttaaggtgaataga |
62 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
41702761 |
caagaaaattatgaagctctcttgaaagaggttaaggtaaataga |
41702805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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