View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_30 (Length: 210)
Name: NF2126_low_30
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 6326985 - 6326816
Alignment:
| Q |
19 |
aatataggtaatggaatctttacaaccaaaaagagaggtattttataatacctcatatttattgatcatttcaatccaaacacaaccctgtttgctagga |
118 |
Q |
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| T |
6326985 |
aatataagtaatggaatctctgcaacaaaaaagagaggtattttataatacctcatatttattgatcatttcaatccaaacacaaccctgtttgctagga |
6326886 |
T |
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| Q |
119 |
ctcgaacctgtgccaactagggtataccttaagatgattaccataccgacgaggcaagctagcaattaac |
188 |
Q |
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| T |
6326885 |
ctcgaacctgtgccaactagggtataccttaagatgattaccataccgacaaggcgagctagcaattaac |
6326816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 6337481 - 6337453
Alignment:
| Q |
47 |
aaaagagaggtattttataatacctcata |
75 |
Q |
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| T |
6337481 |
aaaagagaggtattttataatacctcata |
6337453 |
T |
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