View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2126_low_31 (Length: 209)

Name: NF2126_low_31
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2126_low_31
NF2126_low_31
[»] chr1 (11 HSPs)
chr1 (5-175)||(15035285-15035455)
chr1 (7-192)||(15015814-15015999)
chr1 (1-185)||(15000802-15000986)
chr1 (5-185)||(14465855-14466035)
chr1 (5-192)||(14501962-14502146)
chr1 (5-185)||(14534628-14534808)
chr1 (6-185)||(15009413-15009589)
chr1 (6-185)||(15030511-15030687)
chr1 (6-175)||(15023530-15023696)
chr1 (5-185)||(14480750-14480942)
chr1 (5-185)||(14524651-14524828)
[»] scaffold0400 (2 HSPs)
scaffold0400 (5-186)||(5260-5441)
scaffold0400 (5-185)||(10759-10936)
[»] scaffold0365 (2 HSPs)
scaffold0365 (5-186)||(5904-6085)
scaffold0365 (5-185)||(11402-11579)
[»] chr7 (3 HSPs)
chr7 (113-185)||(16023082-16023154)
chr7 (113-185)||(16101174-16101246)
chr7 (113-185)||(16170852-16170924)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 15035285 - 15035455
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15035285 gcaagccttgacaaccacaacagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 15035384  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcactt 175  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||    
T  15035385 ccatcaacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcactt 15035455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 15015814 - 15015999
Alignment:
Q  7 aagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaatcc 106  Q
    |||| |||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15015814 aagctttgacaaccaaagcaaagcattactctcttcatggattggtaataatccttgtagtagctgggaaggaatcacatgtgatgatgattcaaaatcc 15015913  T
Q  107 atctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatccgtacctt 192  Q
    ||| ||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||    
T  15015914 atcaacaaggtaaatctcaccaatattggactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaaatccgtacctt 15015999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 15000802 - 15000986
Alignment:
Q  1 gaaggcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || | |||    
T  15000802 gaaggcaagccttgacaaccacagcagggcattgctctcttcatggattggcaataatccttgtagtagttgggaaggaatcacgtgtgattatcaatca 15000901  T
Q  101 aaatccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    ||||||||| ||| | ||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||||||||||||    
T  15000902 aaatccatcaacatgataaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcacttacaaaaatcc 15000986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 14465855 - 14466035
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    |||||| |||||||||| |||| | || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14465855 gcaagctttgacaaccaaagcaagacactactctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgaatcaaaat 14465954  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    | ||||||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||| |||||||||    
T  14465955 caatctacaaggtaaatctcaccaatattggactaaaaggtacgcttcaaactctcaatttctcatcacttccaaaaatcc 14466035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 14501962 - 14502146
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    ||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||   |||||||||||||||||||||| ||||||||||||    
T  14501962 gcaagccttgacaacaacagtagggcattgctttcttcatggaatggtaataatccttgtag---ttgggaaggaatcacatgtgataatgattcaaaat 14502058  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatccgtacctt 192  Q
    ||||| ||||||||||||||||  ||||| || |||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||    
T  14502059 ccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttatcatcacttccaaaaatccgcacctt 14502146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 14534808 - 14534628
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    ||||||||||||||||| ||||  || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || | ||||| |    
T  14534808 gcaagccttgacaaccatagcaatgctttgctctcttcatggattggcaataatccttgtagtagttgggaaggaatcacgtgtgattataaatcaaagt 14534709  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    ||||| ||||||||||||||||  ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||    
T  14534708 ccatcaacaaggtaaatctcactgatattggactaaaaggtacgcttcaaagtctcaatttctcatcacttacaaaaatcc 14534628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 15009413 - 15009589
Alignment:
Q  6 caagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaatc 105  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||   |||||||||||||| |||||| |||| || || ||    
T  15009413 caagccttgacaaccatagcagggcatttctctcttcatggattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcgaagtc 15009509  T
Q  106 catctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    |||| ||||||||||||||||||||||| || |||||||||| |||||||||||||| |||||||||||| |||||||||    
T  15009510 catcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaaatcc 15009589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 15030511 - 15030687
Alignment:
Q  6 caagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaatc 105  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||   |||||||||||||| |||||| |||| || || ||    
T  15030511 caagccttgacaaccatagcagggcatttctctcttcatggattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcgaagtc 15030607  T
Q  106 catctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    |||| ||||||||||||||||||||||| || |||||||||| |||||||||||||| |||||||||||| |||||||||    
T  15030608 catcaacaaggtaaatctcaccaatattggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaaatcc 15030687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 15023530 - 15023696
Alignment:
Q  6 caagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaatc 105  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||   |||||||||||||| |||||| |||| || || ||    
T  15023530 caagccttgacaaccatagcagggcatttctctcttcatggattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcgaagtc 15023626  T
Q  106 catctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcactt 175  Q
    |||| ||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||    
T  15023627 catcaacaaggtaaatctcaccaatattggattaaacggtactcttcaaagtctcaatttctcatcactt 15023696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 14480750 - 14480942
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagt------------tgggaaggaatcacatgtgatg 92  Q
    |||||| ||||||| || |||| || | | ||||||||||||||||||||||||||||||||||||            ||||||||||||| |||||||     
T  14480750 gcaagctttgacaaacaaagcaaggaaatactctcttcatggattggtaataatccttgtagtagtattggactaagttgggaaggaatcatatgtgata 14480849  T
Q  93 atgattcaaaatccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    || | |||||||| ||  ||||| || ||||||||| | ||  | |||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  14480850 ataactcaaaatctattaacaagatagatctcaccagttttgaactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaaatcc 14480942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 14524828 - 14524651
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    |||||| |||||||||| |||| | | |||||||||||||||||||||||||| ||||| | |   ||||  ||||||||||||||||   | |||||||    
T  14524828 gcaagctttgacaaccaaagcaagtctttgctctcttcatggattggtaataagccttgcaat---tgggtgggaatcacatgtgatggcaagtcaaaat 14524732  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    | ||||||||| || ||||  | | |||| || |||||||||| ||||| | ||||||| ||||||||||| |||||||||    
T  14524731 ctatctacaagatacatcttgcaagtattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatcc 14524651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 5260 - 5441
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    |||||| |||||||||| || ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||  |||||| |||||||    
T  5260 gcaagctttgacaaccatagtagggcattgctctcttcatggatcggtaacgatccttgtagtagttgggaaggaatcacatgttgtgatgactcaaaat 5359  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatccg 186  Q
    | |||| |||| ||||||||||||||||| |  ||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  5360 ctatctgcaagttaaatctcaccaatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccg 5441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 10759 - 10936
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    |||||| |||||||||| |||| | |||||||||||||||||||||||||||| ||||   | | |||||  ||||||||||||||||   | |||||||    
T  10759 gcaagctttgacaaccaaagcaagtcattgctctcttcatggattggtaataagcctt---gcaattgggtgggaatcacatgtgatggcaagtcaaaat 10855  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    | ||||||||| || ||||  | | |||| || |||||||||| ||||| | ||||||| ||||||||||| |||||||||    
T  10856 ctatctacaagatacatcttgcaagtattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatcc 10936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 5904 - 6085
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    |||||| |||||||||| || ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||  |||||| |||||||    
T  5904 gcaagctttgacaaccatagtagggcattgctctcttcatggatcggtaacgatccttgtagtagttgggaaggaatcacatgttgtgatgactcaaaat 6003  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatccg 186  Q
    | |||| |||| ||||||||||||||||| |  ||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  6004 ctatctgcaagttaaatctcaccaatattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccg 6085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 11402 - 11579
Alignment:
Q  5 gcaagccttgacaaccacagcagggcattgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaat 104  Q
    |||||| |||||||||| |||| | |||||||||||||||||||||||||||| ||||   | | |||||  ||||||||||||||||   | |||||||    
T  11402 gcaagctttgacaaccaaagcaagtcattgctctcttcatggattggtaataagcctt---gcaattgggtgggaatcacatgtgatggcaagtcaaaat 11498  T
Q  105 ccatctacaaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    | ||||||||| || ||||  | | |||| || |||||||||| ||||| | ||||||| ||||||||||| |||||||||    
T  11499 ctatctacaagatacatcttgcaagtattggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatcc 11579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 16023082 - 16023154
Alignment:
Q  113 aaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    |||||||||||||| |||||  |||| |||||||||||| | ||||| || |||||||||||| |||| ||||    
T  16023082 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcc 16023154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 16101174 - 16101246
Alignment:
Q  113 aaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    |||||||||||||| |||||  |||| |||||||||||| | ||||| || |||||||||||| |||| ||||    
T  16101174 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcc 16101246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 16170852 - 16170924
Alignment:
Q  113 aaggtaaatctcaccaatattcgattaaaaggtacgcttcagagtctcaatttctcatcacttacaaaaatcc 185  Q
    |||||||||||||| |||||  |||| |||||||||||| | ||||| || |||||||||||| |||| ||||    
T  16170852 aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcc 16170924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University