View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_4 (Length: 442)
Name: NF2126_low_4
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 19284362 - 19284797
Alignment:
| Q |
1 |
attttcttaggttttttataattaaaaatattttacctctttgtgtctctatgatttattgtaaataatgggatatattcggagttctatgtgaatgatg |
100 |
Q |
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| T |
19284362 |
attttcttaggttttttataattaaaaatattttacctctttgtgtctctatgatttattgtaaataatgggatatattcggagttttatgtgaatgatg |
19284461 |
T |
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| Q |
101 |
atgaggattctacttgagctaatgaaatgtagctagagtgcattaaattaacatgcttatgtcaaannnnnnnnnn--------gagggaatgcttatgt |
192 |
Q |
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| T |
19284462 |
atgaggattctacttgagctaatgaaatgtagctagagtgcattaaattaacatgcttatgtcaatttttttttttttttttttgagggaatgcttatgt |
19284561 |
T |
|
| Q |
193 |
caatttcttaattacctttagttgcatgctttacataactaaccnnnnnnngttgcatgcttttacacgagtgtgtgcacgcacaccccatattttaatt |
292 |
Q |
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| T |
19284562 |
caatttcttaattacctttagttgcatgctttacataactaaccaaaaaaagttgcatgcttttacacgagtgtgtgcacgcataccccatattttaatt |
19284661 |
T |
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| Q |
293 |
ggtatcaataaaatagtgatgaaaatttagtcaattagaatatggtgaataaaaaatttataaagatatagtattggatt-aaaaaatgaagtaggtggg |
391 |
Q |
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| T |
19284662 |
ggtatcaataaaatagtgatgaaaatttagtcaattagaatatggtgaataaaaaattatgaaagatataatattggattaaaaaaatgaagtaggtggg |
19284761 |
T |
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| Q |
392 |
tttttgtgcgtgattcatatgctagaaatatacttt |
427 |
Q |
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| T |
19284762 |
tttttgtgcgtgattcatatgctagaaatatacttt |
19284797 |
T |
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