View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_5 (Length: 442)
Name: NF2126_low_5
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 307 - 423
Target Start/End: Complemental strand, 12794582 - 12794466
Alignment:
| Q |
307 |
acatgaaattcttatagaatgattacaacatcttgatatattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgttt |
406 |
Q |
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|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
12794582 |
acataaaattcttataaaatgattacaacatgttgatctattgttcatacgatgaacataaaacaaaaactaacgacttacaaaatcaagaatagtgttt |
12794483 |
T |
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| Q |
407 |
ctacaaccaggtctatc |
423 |
Q |
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| T |
12794482 |
ctacaaccaggtctatc |
12794466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 307 - 423
Target Start/End: Complemental strand, 12731790 - 12731676
Alignment:
| Q |
307 |
acatgaaattcttatagaatgattacaacatcttgatatattgttcatacgataaacacaaaacataaactaacgacttacaaaatcaagaatagtgttt |
406 |
Q |
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|||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
12731790 |
acataaaattcttataaaatgattacaacatgttgatctattgttcatacgatgaacacaa--caaaaactaacgacttacaaaatcaagaatagtgttt |
12731693 |
T |
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| Q |
407 |
ctacaaccaggtctatc |
423 |
Q |
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| T |
12731692 |
ctacaaccaggtctatc |
12731676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 12794996 - 12794847
Alignment:
| Q |
4 |
tgtatcatgacataactagggcatgaagcat--gtttgaattagtttcaaaaataaaagtagaaagataagtacgataagacacaacacaacataacagt |
101 |
Q |
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| T |
12794996 |
tgtataatgacataaccagggcatgaagtatatgtttgaattaatttcaaaaataaaagtagaaagataag-----taggacacaacacaacttaacagt |
12794902 |
T |
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| Q |
102 |
acttgatcacataaatcatagatagcacaagacgcaaacagcgtaaaccagtaacaa |
158 |
Q |
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| T |
12794901 |
acttaatcac--aaatcataaatagaacaagatgcaaataacataaaccaataacaa |
12794847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 12732195 - 12732090
Alignment:
| Q |
4 |
tgtatcatgacataactagggcatgaagcat--gtttgaattagtttcaaaaataaaagtagaaagataagtacgataagacacaacacaacataacagt |
101 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
12732195 |
tgtataatgacataaccagggcatgaagcatatgtttgaattaatttcaaaaataaaagtagaaagataag-----taggacacaacacaacttaacagt |
12732101 |
T |
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| Q |
102 |
acttgatcaca |
112 |
Q |
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|||| |||||| |
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| T |
12732100 |
acttaatcaca |
12732090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 12794811 - 12794749
Alignment:
| Q |
168 |
gatgccacaagattctactcatagtacaacaacatagaatatataccatcatctatgaagcaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
12794811 |
gatgccacaagattctactcatagtacaacaacatagaattaatacaatcatctatgaagcaa |
12794749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 12732010 - 12731948
Alignment:
| Q |
168 |
gatgccacaagattctactcatagtacaacaacatagaatatataccatcatctatgaagcaa |
230 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
12732010 |
gatgccataagattctactcatagtacaacaacatagaattaatacaatcatctatgaagcaa |
12731948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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