View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2126_low_8 (Length: 414)
Name: NF2126_low_8
Description: NF2126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2126_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 31348604 - 31348222
Alignment:
| Q |
14 |
aatatactatatagaagaagacttgatatatcatgacaaattaataaattattggagaaacaaagaaaatggaggatgtccaatgagaaactgtgagtca |
113 |
Q |
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| T |
31348604 |
aatatactatatagaagaagacttgatatatcatgacaaattaataaattattggagaaacaaagaaaatggaggatgtcaaatgagaaactgtgagtca |
31348505 |
T |
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| Q |
114 |
ttttcaaaataatggaatcattttagatttattgaaaaaacccaagaccaattacatgatgtaaaaacacaatgaaatgatcaaaacacagtgttgcacg |
213 |
Q |
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| T |
31348504 |
ttttcaaaataatggaatcattttagatttattgaaaaaacccaagaccaattacatgatgtaaaaacacaatgaaatgatcaaaacacagtgttgcacg |
31348405 |
T |
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| Q |
214 |
ttagagaattaagttcggacgatgattctttgtttatggacgctaaggactggagctaagctctcatacaagcgctaggcagagctgagtgtcgacgatg |
313 |
Q |
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| T |
31348404 |
ttagagaattaagttcggacgatgattctctgtttatggacgctaaggactggagctaagctctcatacaagcgctaggcagagctgagcgtcgacgatg |
31348305 |
T |
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| Q |
314 |
aaagtgccaggtgtgtttctgtgcaatctgaaaacatgtgttttgtgcaatttttcttgtattttgggttccaatggttgtaa |
396 |
Q |
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| T |
31348304 |
aaagcgccaggtgtgtttctgtgcaatctgaaaacatgtgttttctgcgatttttcttgtattttgggttccaatggttgtaa |
31348222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 13311002 - 13311048
Alignment:
| Q |
157 |
aagaccaattacatgatgtaaaaacacaatgaaatgatcaaaacaca |
203 |
Q |
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| T |
13311002 |
aagaccaattacatgattcaaaaacacaagaaaatgatcaaaacaca |
13311048 |
T |
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