View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21270_high_5 (Length: 283)
Name: NF21270_high_5
Description: NF21270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21270_high_5 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 45177391 - 45177253
Alignment:
| Q |
145 |
tattttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatat |
244 |
Q |
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| T |
45177391 |
tattttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatat |
45177292 |
T |
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| Q |
245 |
ggttcggtagcttcttcaacgaatcccctgacaatcctc |
283 |
Q |
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| T |
45177291 |
ggttcggtagcttcttcaacgaatcccctgacaatcctc |
45177253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 149 - 283
Target Start/End: Complemental strand, 35816894 - 35816760
Alignment:
| Q |
149 |
ttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatatggtt |
248 |
Q |
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| T |
35816894 |
ttactctataaatgtacaaaaaactaaagtaaactaattaaaactaaattaagggtatctaacaatcctctgctttcatgtccttcaagattatacggtg |
35816795 |
T |
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| Q |
249 |
cggtagcttcttcaacgaatcccctgacaatcctc |
283 |
Q |
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| T |
35816794 |
cagtagcttattcaatgaatcccccgacaatcctc |
35816760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 45568169 - 45568273
Alignment:
| Q |
179 |
aaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatatggttcggtagcttcttcaacgaatcccctgacaa |
278 |
Q |
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| T |
45568169 |
aaactaattaaaactaaattaagggtatctaacaatcctctgtcttcatgtccttctagatcatatggtgcagtagcttattcaatgaatcccctgacaa |
45568268 |
T |
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| Q |
279 |
tcctc |
283 |
Q |
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| T |
45568269 |
tcctc |
45568273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 45177480 - 45177424
Alignment:
| Q |
80 |
attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagtaataa |
136 |
Q |
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| T |
45177480 |
attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagtaataa |
45177424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 45093459 - 45093563
Alignment:
| Q |
149 |
ttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatatggtt |
248 |
Q |
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| T |
45093459 |
ttactctataaatgtacaaaaaactaaagtaaactaattaaaactaaatgaagggtatctaacaatcctttgccttcgtgtccttcaagatcatatggtg |
45093558 |
T |
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| Q |
249 |
cggta |
253 |
Q |
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||||| |
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| T |
45093559 |
cggta |
45093563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 45182325 - 45182280
Alignment:
| Q |
43 |
agagttgattaacaaagtgtaaaacttctcacttttcattaaagtt |
88 |
Q |
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| T |
45182325 |
agagttgattaacaaagtgtaaaacttctcacttttcattaaagtt |
45182280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 45102728 - 45102797
Alignment:
| Q |
213 |
atcctctgccttcatgcccttcaagataatatggttcggtagcttcttcaacgaatcccctgacaatcct |
282 |
Q |
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| T |
45102728 |
atcctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcct |
45102797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 45093344 - 45093391
Alignment:
| Q |
36 |
gaatgaaagagttgattaacaaagtgtaaaacttctcacttttcatta |
83 |
Q |
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| T |
45093344 |
gaatgaaagagttgatgaacaaagtataaaacttatcacttttcatta |
45093391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 35817040 - 35817000
Alignment:
| Q |
38 |
atgaaagagttgattaacaaagtgtaaaacttctcactttt |
78 |
Q |
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| T |
35817040 |
atgaaagagttgattaacaaagtataaaacttaccactttt |
35817000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 9797217 - 9797269
Alignment:
| Q |
80 |
attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagta |
132 |
Q |
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| T |
9797217 |
attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagta |
9797269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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