View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21270_high_8 (Length: 214)
Name: NF21270_high_8
Description: NF21270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21270_high_8 |
 | |
|
| [»] chr2 (13 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45570572 - 45570359
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45570572 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45570473 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45570472 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45570373 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45570372 |
gacgtcaggatgac |
45570359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45574239 - 45574026
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45574239 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45574140 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45574139 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45574040 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45574039 |
gacgtcaggatgac |
45574026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45577906 - 45577693
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45577906 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45577807 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45577806 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45577707 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45577706 |
gacgtcaggatgac |
45577693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45581573 - 45581360
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45581573 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45581474 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45581473 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45581374 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45581373 |
gacgtcaggatgac |
45581360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45585240 - 45585027
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45585240 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45585141 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45585140 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45585041 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45585040 |
gacgtcaggatgac |
45585027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45588907 - 45588694
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45588907 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45588808 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45588807 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45588708 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45588707 |
gacgtcaggatgac |
45588694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45592574 - 45592361
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45592574 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45592475 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45592474 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45592375 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45592374 |
gacgtcaggatgac |
45592361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45596241 - 45596028
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45596241 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45596142 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45596141 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45596042 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45596041 |
gacgtcaggatgac |
45596028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45599908 - 45599695
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45599908 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45599809 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45599808 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45599709 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45599708 |
gacgtcaggatgac |
45599695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45603575 - 45603362
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45603575 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45603476 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45603475 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45603376 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45603375 |
gacgtcaggatgac |
45603362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45607242 - 45607029
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45607242 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45607143 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45607142 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45607043 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45607042 |
gacgtcaggatgac |
45607029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45610909 - 45610696
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45610909 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45610810 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45610809 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45610710 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45610709 |
gacgtcaggatgac |
45610696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45614576 - 45614363
Alignment:
| Q |
1 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaaccnnnnnnnctctgcaatacaaccatatcagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45614576 |
acgattgtcaccattgtcgcgcctctgctccaccatatgtcatcttcttttccatctctgacacaacctttttttctctgcaatacaaccataacagttc |
45614477 |
T |
|
| Q |
101 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgcaggtaacgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45614476 |
agatttgcaacacaacctcctcttcttcttttcttcctcgccaccaccgtccagatttggtactcaccgcgaatatgtcgcgattcacgaaggtaacgac |
45614377 |
T |
|
| Q |
201 |
gacgtcaggatgac |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45614376 |
gacgtcaggatgac |
45614363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University