View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21270_low_13 (Length: 227)

Name: NF21270_low_13
Description: NF21270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21270_low_13
NF21270_low_13
[»] chr2 (13 HSPs)
chr2 (1-221)||(45570176-45570394)
chr2 (1-221)||(45573843-45574061)
chr2 (1-221)||(45577510-45577728)
chr2 (1-221)||(45581177-45581395)
chr2 (1-221)||(45584844-45585062)
chr2 (1-221)||(45588511-45588729)
chr2 (1-221)||(45592178-45592396)
chr2 (1-221)||(45595845-45596063)
chr2 (1-221)||(45599512-45599730)
chr2 (1-221)||(45603179-45603397)
chr2 (1-221)||(45606846-45607064)
chr2 (1-221)||(45610513-45610731)
chr2 (1-221)||(45614180-45614398)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45570394 - 45570176
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45570394 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45570295  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45570294 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45570197  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45570196 gtggcagagtggggctgccac 45570176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45574061 - 45573843
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45574061 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45573962  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45573961 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45573864  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45573863 gtggcagagtggggctgccac 45573843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45577728 - 45577510
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45577728 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45577629  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45577628 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45577531  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45577530 gtggcagagtggggctgccac 45577510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45581395 - 45581177
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45581395 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45581296  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45581295 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45581198  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45581197 gtggcagagtggggctgccac 45581177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45585062 - 45584844
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45585062 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45584963  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45584962 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45584865  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45584864 gtggcagagtggggctgccac 45584844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45588729 - 45588511
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45588729 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45588630  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45588629 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45588532  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45588531 gtggcagagtggggctgccac 45588511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45592396 - 45592178
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45592396 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45592297  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45592296 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45592199  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45592198 gtggcagagtggggctgccac 45592178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45596063 - 45595845
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45596063 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45595964  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45595963 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45595866  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45595865 gtggcagagtggggctgccac 45595845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45599730 - 45599512
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45599730 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45599631  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45599630 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45599533  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45599532 gtggcagagtggggctgccac 45599512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45603397 - 45603179
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45603397 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45603298  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45603297 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45603200  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45603199 gtggcagagtggggctgccac 45603179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45607064 - 45606846
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45607064 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45606965  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45606964 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45606867  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45606866 gtggcagagtggggctgccac 45606846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45610731 - 45610513
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45610731 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45610632  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45610631 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45610534  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45610533 gtggcagagtggggctgccac 45610513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45614398 - 45614180
Alignment:
Q  1 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccgcctattttgtccaagatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45614398 cgcgattcacgaaggtaacgacgacgtcaggatgacgatctcgtctccgtcgctccttcgccgacctggataacctcgccacctattttgtccaagatct 45614299  T
Q  101 ctctgtgatggagatccactctctctcaagtccgacgcttcctctttcaacgaccttgaggctagatcctccttgacattggtttcatgacaacgagtgg 200  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  45614298 ctctgtgatggagatccactc--tctcgagtccgacgcttcctctttcaacgaccttgaggctagatcctccctgacattggtttcatgacaacgagtga 45614201  T
Q  201 gtggcagagtggggctgccac 221  Q
    |||||||||||||||||||||    
T  45614200 gtggcagagtggggctgccac 45614180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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