View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21270_low_16 (Length: 211)
Name: NF21270_low_16
Description: NF21270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21270_low_16 |
 | |
|
| [»] scaffold0457 (1 HSPs) |
| | |
|
| [»] scaffold0478 (1 HSPs) |
| | |
|
| [»] scaffold0488 (1 HSPs) |
| | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0457 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 8932 - 8762
Alignment:
| Q |
20 |
aggggctttggtttaggctttagttttactctctgttgatttacttcttaatgtttgtcttgttaatgtaacctggtactttccttagtagtggggtgtg |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
8932 |
aggggccttggtttaggctttagttttactctatgttgatttacttctttatgtttgtctttttaatgtaacctgctactttccttagtagcggggtgtg |
8833 |
T |
|
| Q |
120 |
ttaggctacttagaaagtgattttgctttaaatctggtctttttgtttaattgggttttggcctagtcccc |
190 |
Q |
| |
|
||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8832 |
ttaagctacttaggaagtgactttgctttacatctggtctttttgtttaattgggttttggcctagtcccc |
8762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 21574614 - 21574474
Alignment:
| Q |
50 |
ctctgttgatttacttcttaatgttt--gtcttgttaatgtaacctggtactttccttagtagtggggtgtgttaggctacttagaaagtgattttgctt |
147 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| | |||| ||||||| |
|
|
| T |
21574614 |
ctctgttgatctacttctttatgtttttgtcttcttaatgtaacctggtactttctttagtagcagggtgtgttaggctacttaggatgtgactttgctt |
21574515 |
T |
|
| Q |
148 |
taaatctggtcttttt-gtttaattgggttttggcctagtc |
187 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21574514 |
tacatctggtctttttagtttaattgggttttggcctagtc |
21574474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 8034274 - 8034439
Alignment:
| Q |
27 |
ttggtttaggctttagttttactctctgttgatttacttcttaatgtttgt--cttgttaatgtaacctggtactttccttagtagtggggtgtgttagg |
124 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||| ||| ||| ||||||| ||| ||||||| ||||||||| ||||| |||| |||||||||||| |
|
|
| T |
8034274 |
ttggtgtaggcttcagttttactctctattgattttcttttta-tgtttgtgtcttcttaatgtgacctggtaccttcctatgtagcagggtgtgttagg |
8034372 |
T |
|
| Q |
125 |
ctacttagaaagtgattttgctttaaatctggtctttt-tgtttaattgggttttggcctagtcccc |
190 |
Q |
| |
|
|||||||| |||||| || |||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8034373 |
ctacttaggaagtgacttagctttacatctggtcttttatgtttaattgggttttggcctagtcccc |
8034439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0478 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 5235 - 5071
Alignment:
| Q |
27 |
ttggtttaggctttagttttactctctgttgatttacttcttaatgtt--tgtcttgttaatgtaacctggtactttccttagtagtggggtgtgttagg |
124 |
Q |
| |
|
||||| ||||||| ||||||| |||| ||||||| ||| || ||||| |||||| ||||||| ||||||||| ||||| |||| || ||||||||| |
|
|
| T |
5235 |
ttggtgtaggcttcagtttta--ctctattgattttctt-tttatgtttgtgtcttcttaatgtgacctggtaccttcctatgtagcaggatgtgttagg |
5139 |
T |
|
| Q |
125 |
ctacttagaaagtgattttgctttaaatctggtctttt-tgtttaattgggttttggcctagtcccct |
191 |
Q |
| |
|
|||||||| |||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5138 |
ctacttaggaagtgacatagctttacatctggtcttttatgtttaattgggttttggcctagtcccct |
5071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 39317901 - 39317979
Alignment:
| Q |
113 |
gggtgtgttaggctacttagaaagtgattttgctttaaatctggtctttt-tgtttaattgggttttggcctagtcccc |
190 |
Q |
| |
|
|||||||||||||||||||| ||| || || |||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39317901 |
gggtgtgttaggctacttaggaagcgacttagctttacatctggtcttttatgtttaattgggttttggcctagtcccc |
39317979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 13655109 - 13655035
Alignment:
| Q |
113 |
gggtgtgttaggctacttagaaagtgattttgctttaaatctggtctttt-tgtttaattgggttttggcctagt |
186 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13655109 |
gggtgtgttaggctacttaggaagtgacttaactttacatctggtcttttatgtttaattgggttttggcctagt |
13655035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0488 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0488
Description:
Target: scaffold0488; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 4684 - 4756
Alignment:
| Q |
119 |
gttaggctacttagaaagtgattttgctttaaatctggtctttt-tgtttaattgggttttggcctagtcccc |
190 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | ||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
4684 |
gttaggctacttaggaagtgtctttgcttttcttttggtcttttatgtttaattgggtattggcttagtcccc |
4756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 11903 - 11995
Alignment:
| Q |
101 |
tccttagtagtggggtgtgttaggctacttagaaagtgattttgctttaaatctggtctttt-tgtttaattgggttttggcctagtcccctc |
192 |
Q |
| |
|
||||||||||| | ||| |||||||||||||| ||||| |||||||| | ||||||||| |||||||||| || ||||| | |||||||| |
|
|
| T |
11903 |
tccttagtagtagtgtgagttaggctacttaggaagtgtctttgcttttcttatggtcttttatgtttaattgagtattggcttcgtcccctc |
11995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University