View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21270_low_9 (Length: 283)

Name: NF21270_low_9
Description: NF21270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21270_low_9
NF21270_low_9
[»] chr4 (9 HSPs)
chr4 (145-283)||(45177253-45177391)
chr4 (149-283)||(35816760-35816894)
chr4 (179-283)||(45568169-45568273)
chr4 (80-136)||(45177424-45177480)
chr4 (149-253)||(45093459-45093563)
chr4 (43-88)||(45182280-45182325)
chr4 (213-282)||(45102728-45102797)
chr4 (36-83)||(45093344-45093391)
chr4 (38-78)||(35817000-35817040)
[»] chr7 (1 HSPs)
chr7 (80-132)||(9797217-9797269)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 45177391 - 45177253
Alignment:
Q  145 tattttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177391 tattttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatat 45177292  T
Q  245 ggttcggtagcttcttcaacgaatcccctgacaatcctc 283  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45177291 ggttcggtagcttcttcaacgaatcccctgacaatcctc 45177253  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 149 - 283
Target Start/End: Complemental strand, 35816894 - 35816760
Alignment:
Q  149 ttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatatggtt 248  Q
    |||| ||| |||| ||||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||| ||| |||     
T  35816894 ttactctataaatgtacaaaaaactaaagtaaactaattaaaactaaattaagggtatctaacaatcctctgctttcatgtccttcaagattatacggtg 35816795  T
Q  249 cggtagcttcttcaacgaatcccctgacaatcctc 283  Q
    | ||||||| ||||| |||||||| ||||||||||    
T  35816794 cagtagcttattcaatgaatcccccgacaatcctc 35816760  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 45568169 - 45568273
Alignment:
Q  179 aaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatatggttcggtagcttcttcaacgaatcccctgacaa 278  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||| |||| ||||||| | ||||||| ||||| ||||||||||||||    
T  45568169 aaactaattaaaactaaattaagggtatctaacaatcctctgtcttcatgtccttctagatcatatggtgcagtagcttattcaatgaatcccctgacaa 45568268  T
Q  279 tcctc 283  Q
    |||||    
T  45568269 tcctc 45568273  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 45177480 - 45177424
Alignment:
Q  80 attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagtaataa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177480 attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagtaataa 45177424  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 45093459 - 45093563
Alignment:
Q  149 ttaccctaaaaatatacaaaagactgaagcaaactaattaaaagtaaattaagggcatctaacaatcctctgccttcatgcccttcaagataatatggtt 248  Q
    |||| ||| |||| ||||||| ||| ||| ||||||||||||| ||||| ||||| ||||||||||||| ||||||| || |||||||||| |||||||     
T  45093459 ttactctataaatgtacaaaaaactaaagtaaactaattaaaactaaatgaagggtatctaacaatcctttgccttcgtgtccttcaagatcatatggtg 45093558  T
Q  249 cggta 253  Q
    |||||    
T  45093559 cggta 45093563  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 45182325 - 45182280
Alignment:
Q  43 agagttgattaacaaagtgtaaaacttctcacttttcattaaagtt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45182325 agagttgattaacaaagtgtaaaacttctcacttttcattaaagtt 45182280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 45102728 - 45102797
Alignment:
Q  213 atcctctgccttcatgcccttcaagataatatggttcggtagcttcttcaacgaatcccctgacaatcct 282  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||| ||||| |||||||| |||||||||    
T  45102728 atcctctgccttcatgcccttcaaaaccatatggtgcggtagcttattcaatgaatcccccgacaatcct 45102797  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 45093344 - 45093391
Alignment:
Q  36 gaatgaaagagttgattaacaaagtgtaaaacttctcacttttcatta 83  Q
    |||||||||||||||| |||||||| |||||||| |||||||||||||    
T  45093344 gaatgaaagagttgatgaacaaagtataaaacttatcacttttcatta 45093391  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 35817040 - 35817000
Alignment:
Q  38 atgaaagagttgattaacaaagtgtaaaacttctcactttt 78  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  35817040 atgaaagagttgattaacaaagtataaaacttaccactttt 35817000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 9797217 - 9797269
Alignment:
Q  80 attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagta 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797217 attaaagttaaaagtgtttgaaatccctttttagatagagatgaggtaaagta 9797269  T

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