View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21271_high_2 (Length: 450)
Name: NF21271_high_2
Description: NF21271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21271_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 6 - 434
Target Start/End: Complemental strand, 39988267 - 39987839
Alignment:
| Q |
6 |
acatcatcacaaacttcatcactaaacgacaccgtattaaacccgccaccatgcaacctcctcctccaccgcgccgccgtttcacgtctctccactgact |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39988267 |
acatcatcacaaacttcatcactaaacgacaccgtattaaacccgccaccatgcaacctcctcctccaccgcgccgccgtttcacgtctctccactgact |
39988168 |
T |
|
| Q |
106 |
cataaggatcacaagcaaccaaatcaacaatacctctcccagcttctctttctagcatcaacctctcactacttgttcttgaaaaactttcatcaagtgc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39988167 |
cataaggatcacaagcaaccaaatcaacaatacctctcccagcttctctttctagcatcaacctctcactacttgttcttgaaaaactttcatcaagtgc |
39988068 |
T |
|
| Q |
206 |
ttcaaaataaaccctaaaccatcttaaacactctttaaaaccttccacgaaatccgaaccaaaacaaacttctaaatcagcttcttcttcaacaatagtt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39988067 |
ttcaaaataaaccctaaaccatcttaaacactctttaaaaccttccacgaaatccgaaccaaaacaaacttctaaatcagcttcttcttcaacaatagtt |
39987968 |
T |
|
| Q |
306 |
aaaaccctaggttctaacccacgaagcaaagatataaacaaatcacggtggtttccggctccggatatcgaatgtaaagagtttacacagtttatagcca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39987967 |
aaaaccctaggttctaacccacgaagcaaagatataaacaaatcacggtggtttccggctccggatatcgaatgtaaagagtttacacagtttatagcca |
39987868 |
T |
|
| Q |
406 |
aagcttcatcttctttaatatctaaatca |
434 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
39987867 |
aagcttcatcttctttaatatctaaatca |
39987839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 5365046 - 5365287
Alignment:
| Q |
6 |
acatcatcacaaacttcatcactaaacgacaccgtattaaacccgccaccatgcaacctcctcctccaccgcgccgccgtttcacgtctctccactgact |
105 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||| | || ||||| | |||| ||||| | | || | |||| |
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| T |
5365046 |
acatcatcacaaacttcctcactaaacgccaccgtattaaaccctcgaccatgcaaacgccgtgaccacctcaccgcagtttctctccgttcaatcgact |
5365145 |
T |
|
| Q |
106 |
cataaggatcacaagcaaccaaatcaacaatacctctcccagcttctctttctagcatcaacctctcactacttgttcttgaaaaactttcatcaagtgc |
205 |
Q |
| |
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| ||| |||| || ||||||||||| || |||||||| ||||| ||||| |||||||| | ||| |||| || | | |||||| || || | ||| |
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| T |
5365146 |
ccgccggagcacatgccaccaaatcaactatccctctccctgcttccctttcaagcatcaaacgctcgttactcgtcttcggaaaactctcttctaatgc |
5365245 |
T |
|
| Q |
206 |
ttcaaaataaaccctaaaccatcttaaacactctttaaaacc |
247 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
5365246 |
ttcaaagtaaaccctaaaccaccttaaacactcttcaaaacc |
5365287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 433
Target Start/End: Original strand, 5365466 - 5365494
Alignment:
| Q |
405 |
aaagcttcatcttctttaatatctaaatc |
433 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
5365466 |
aaagcttcatcttctttaatatctaaatc |
5365494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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