View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21271_low_6 (Length: 234)
Name: NF21271_low_6
Description: NF21271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21271_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 8188410 - 8188182
Alignment:
| Q |
6 |
catcatcaaggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatcgac |
105 |
Q |
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| T |
8188410 |
catcatcaaggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatcgac |
8188311 |
T |
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| Q |
106 |
attttgaacatcatcttcatcatcggtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaa |
205 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188310 |
attttgaacatcatcttcatcatcagtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaa |
8188211 |
T |
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| Q |
206 |
atagcatcctcagtatctatgtctatcac |
234 |
Q |
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| T |
8188210 |
atagcatcctcagtatctatgtctatcac |
8188182 |
T |
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