View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21272_low_1 (Length: 732)
Name: NF21272_low_1
Description: NF21272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21272_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Original strand, 14499459 - 14499947
Alignment:
| Q |
15 |
attattctcgataacttctaagagcgaatgaatgtaattatacaattgttcgcttttagaaataccatacaagcaattttgaatttaaccgctaacatag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
14499459 |
attattctcgataacttctaagagcgaatgaatgtaattatacaattattcgtttttagaaataccaaacaagcaattttgaacttaaccgctaacatag |
14499558 |
T |
|
| Q |
115 |
acacatttacaaagtatccctaggcatcttggatattcaggagggtcacaacgatatctgcgacaatcttgatcagaatcacatatagtaaccgctatga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14499559 |
acacatttacaaagtatccctaggcatcttggatattcaggagggtcacaacgatatctgcgacaatcttgatcagaatcacatatagtaaccgctatga |
14499658 |
T |
|
| Q |
215 |
tgataaatnnnnnnnnnnnnnnn--ttgttagcaacatgcgatgaaacgttgagtatcaaattaagagnnnnnnnnnnnnnnnngt--aataataaactt |
310 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
14499659 |
tgataaataaaaaataaataaaaaattgttagtaacatgcgatgaaacgttgagtatcaaattaagagttttttttttttttttttgcaataataaactt |
14499758 |
T |
|
| Q |
311 |
accgttggttacgatggtgagcatgtaaagataaataatcatagcaaaaacaaccttgataatttcacccatattatttatttgtttgtatgtcaaaata |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14499759 |
accgttggttacgatggtgagcatgtaaagataaataatcatagcaaaaacaaccttgataatatcacccatattatttatttgtttgtatgtcaaaata |
14499858 |
T |
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| Q |
411 |
taaatattcatgatcactttatagtgtgaaaaacttcaatcttccaattataattattattaattatctcttgatggtcgtaatagctc |
499 |
Q |
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| T |
14499859 |
taaatattcatgatcactttatagtgtgaaaaacttcaatcttccaattataattattattaattatctcttgatggtcgtaatagctc |
14499947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 546 - 698
Target Start/End: Original strand, 14499994 - 14500146
Alignment:
| Q |
546 |
ccctttcatgatagacaagacacacaccctgattattgtaagcaattatacgtgttgtgataattttgaatatggagtattatgtgaagtatatgtattt |
645 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14499994 |
ccctttcatgatagacaagacacgcaccctgattattgtaagcaattatacgtgttgtgataattttgaatatggagtattatgtgaagtatatgtattt |
14500093 |
T |
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| Q |
646 |
aattttgtgctcttgtgaaattattgtcaacgtacattcaaactcatgaaggt |
698 |
Q |
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| T |
14500094 |
aattgtgtgctcttgtgaaattattgtcaacgtacattcaaactcatgaaggt |
14500146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 302 - 491
Target Start/End: Complemental strand, 15040335 - 15040146
Alignment:
| Q |
302 |
aataaacttaccgttggttacgatggtgagcatgtaaagataaataatcatagcaaaaacaaccttgataatttcacccatattatttatttgtttgtat |
401 |
Q |
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| T |
15040335 |
aataaacttaccgtcgattacaatggtgaacattaaaagataaataaccataacaaaaagaaacttgataatttcatccatattatttacttgtttgtat |
15040236 |
T |
|
| Q |
402 |
gtcaaaatataaatattcatgatcactttatagtgtgaaaaacttcaatcttccaattataattattattaattatctcttgatggtcgt |
491 |
Q |
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|| ||||||||||| |||||||||||||||||| |||| | ||| |||| |||||||||||||||||||| ||| ||||||||||| |
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| T |
15040235 |
gtagaaatataaataggcatgatcactttatagtggaaaaagcctcattctttaaattataattattattaattgtcttttgatggtcgt |
15040146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 598 - 672
Target Start/End: Original strand, 14425754 - 14425828
Alignment:
| Q |
598 |
tgttgtgataattttgaatatggagtattatgtgaagtatatgtatttaattttgtgctcttgtgaaattattgt |
672 |
Q |
| |
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| T |
14425754 |
tgttgtgataattttgaatattgaatattatgtgaagtatatgtatttaattgtgtgatcttgtgaaattattgt |
14425828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 332 - 475
Target Start/End: Original strand, 14350444 - 14350590
Alignment:
| Q |
332 |
catgtaaagataaataatcatagcaaaaacaaccttgataatttcacccatattatt---tatttgtttgtatgtcaaaatataaatattcatgatcact |
428 |
Q |
| |
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|||| |||||||||||||||| || |||||| ||| || ||||||||||| || || || || ||||||||| || ||||| | |||||||||||| |
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| T |
14350444 |
catgaaaagataaataatcattacataaacaaacttcattatttcacccattttgttgtttacttatttgtatgtataactataatttttcatgatcact |
14350543 |
T |
|
| Q |
429 |
ttatagtgtgaaaaacttcaatcttccaattataattattattaatt |
475 |
Q |
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|||||||||||| ||| ||| |||||||| ||||||| ||||||||| |
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| T |
14350544 |
ttatagtgtgaacaacctcattcttccaaatataatttttattaatt |
14350590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 548 - 654
Target Start/End: Complemental strand, 15040079 - 15039973
Alignment:
| Q |
548 |
ctttcatgatagacaagacacacaccctgattattgtaagcaattatacgtgttgtgataattttgaatatggagtattatgtgaagtatatgtatttaa |
647 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||| || |||||||| |||||||||||||||| ||||| |||||| ||| |||||||||||||||| |
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| T |
15040079 |
ctttcatgatagacaagatataaacctcaattattacaatcaattatatgtgttgtgataattttaaatattgagtataatgcaaagtatatgtatttaa |
15039980 |
T |
|
| Q |
648 |
ttttgtg |
654 |
Q |
| |
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|| |||| |
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| T |
15039979 |
ttgtgtg |
15039973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 302 - 403
Target Start/End: Complemental strand, 5153409 - 5153308
Alignment:
| Q |
302 |
aataaacttaccgttggttacgatggtgagcatgtaaagataaataatcatagcaaaaacaaccttgataatttcacccatattatttatttgtttgtat |
401 |
Q |
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||||||||||| | ||||| | ||||||| |||| ||||||||||||||||| || |||||| ||| |||||||||||||||| |||| || |||| || |
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| T |
5153409 |
aataaacttactgctggttgccatggtgaacatgaaaagataaataatcataacataaacaaactttgtaatttcacccatattgtttacttatttggat |
5153310 |
T |
|
| Q |
402 |
gt |
403 |
Q |
| |
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|| |
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| T |
5153309 |
gt |
5153308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 600 - 649
Target Start/End: Original strand, 14350778 - 14350827
Alignment:
| Q |
600 |
ttgtgataattttgaatatggagtattatgtgaagtatatgtatttaatt |
649 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
14350778 |
ttgtgataattttgaatattgagcattatgtgaagtatatgtatttaatt |
14350827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 343 - 475
Target Start/End: Original strand, 14425443 - 14425578
Alignment:
| Q |
343 |
aaataatcatagcaaaaacaaccttgataatttcacccatattatt---tatttgtttgtatgtcaaaatataaatattcatgatcactttatagtgtga |
439 |
Q |
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|||||| ||||||| |||||| |||||||||||||| |||||| || || || |||| ||| ||||||||| | |||||||||||||||| ||| |
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| T |
14425443 |
aaataaacatagcataaacaaacttgataatttcactcatattgttgtttacttatttgattgtagaaatataaacttgcatgatcactttatagcatga |
14425542 |
T |
|
| Q |
440 |
aaaacttcaatcttccaattataattattattaatt |
475 |
Q |
| |
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| ||| ||| |||||||| ||||||||||||||||| |
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| T |
14425543 |
acaacctcattcttccaaatataattattattaatt |
14425578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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