View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21272_low_2 (Length: 584)

Name: NF21272_low_2
Description: NF21272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21272_low_2
NF21272_low_2
[»] chr4 (8 HSPs)
chr4 (99-355)||(10426677-10426932)
chr4 (353-448)||(10427623-10427718)
chr4 (353-447)||(9199750-9199845)
chr4 (386-447)||(9199512-9199573)
chr4 (16-68)||(10426284-10426336)
chr4 (353-404)||(9201332-9201384)
chr4 (386-447)||(12094864-12094925)
chr4 (386-447)||(24257703-24257764)
[»] chr7 (5 HSPs)
chr7 (120-321)||(4410741-4410938)
chr7 (353-447)||(20077317-20077412)
chr7 (353-447)||(4407779-4407872)
chr7 (359-440)||(30061499-30061581)
chr7 (323-351)||(4407898-4407926)
[»] chr8 (5 HSPs)
chr8 (353-448)||(26981034-26981130)
chr8 (353-447)||(26083903-26083998)
chr8 (358-447)||(5334273-5334363)
chr8 (390-447)||(42932716-42932773)
chr8 (417-449)||(7496756-7496788)
[»] chr6 (3 HSPs)
chr6 (356-448)||(31442516-31442609)
chr6 (361-447)||(20915980-20916067)
chr6 (378-447)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (358-447)||(6697935-6698025)
chr5 (353-410)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (353-422)||(11582599-11582669)
chr3 (394-450)||(2241513-2241569)
chr3 (371-449)||(39484801-39484881)
chr3 (378-448)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (376-447)||(38996518-38996590)
chr2 (376-448)||(22625385-22625458)
chr2 (378-447)||(28125536-28125606)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 99 - 355
Target Start/End: Original strand, 10426677 - 10426932
Alignment:
Q  99 agcaagccctgtaaattctagataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttga 198  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10426677 agcaagctctgtaaattctagataagaccttg-aggcatgtgtatcattcaaattgatcaattccaatgtgctgaaataataaatatacaatggtgttga 10426775  T
Q  199 taggatttggaaatatgcatcagataagtcttcagccgcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatat 298  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426776 taggatttggaaatatgcatcagataagtcttcagccgcgcaaaggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatat 10426875  T
Q  299 ttattaagataagattagtgcatcaagtcacatgttaagaaggtagcaatgaaccta 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426876 ttattaagataagattagtgcatcaagtcacatgttaagaaggtagcaatgaaccta 10426932  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 353 - 448
Target Start/End: Original strand, 10427623 - 10427718
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 448  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||| ||| |||||||    
T  10427623 ctaagaagaatttaatgcttggatgatggagggaaatattaggttaaaattagggtatgatattgcttgaccaaacaacctttaataaaaaagata 10427718  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 353 - 447
Target Start/End: Complemental strand, 9199845 - 9199750
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||| | | || ||||||||||||||| || | |||||||||||||||||||    
T  9199845 ctaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagctttagtaagaaagat 9199750  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 386 - 447
Target Start/End: Complemental strand, 9199573 - 9199512
Alignment:
Q  386 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    |||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  9199573 aaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 10426284 - 10426336
Alignment:
Q  16 aaaggagagaataatgtggagaaccgagatactacgatgaagcgttgaattaa 68  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  10426284 aaaggagagaataatgtggagaacggagatattacgatgaagcgttgaattaa 10426336  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 9201384 - 9201332
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaatta 404  Q
    |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  9201384 ctaaggagaatttaatgcttggatgatggtgggaaaatattaggttaaaatta 9201332  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 12094864 - 12094925
Alignment:
Q  386 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    |||||||| |||||||||||||| |   || |||||| |||| |||||||||||||||||||    
T  12094864 aaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 447
Target Start/End: Complemental strand, 24257764 - 24257703
Alignment:
Q  386 aaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    |||||||| ||||||||||||||     ||||||||| |||| |||||||||||||||||||    
T  24257764 aaatattaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 120 - 321
Target Start/End: Complemental strand, 4410938 - 4410741
Alignment:
Q  120 ataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttgataggatttggaaatatgcatc 219  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  4410938 ataagaccttggaggcatgtgtaccattcacattgatcaattccaatgtgctgaattaattaatatacaatggtgctgataggatttgaaaatatgcatc 4410839  T
Q  220 agataagtcttcagccgcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagtgc 319  Q
    |||| |||| |     ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||    
T  4410838 agatcagtcat----tgcacaaaggagaagctaccaaggatattttcaactttccttacatttacgatgcaacttatgtttattaagataagattagcgc 4410743  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 353 - 447
Target Start/End: Original strand, 20077317 - 20077412
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    |||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  20077317 ctaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 353 - 447
Target Start/End: Complemental strand, 4407872 - 4407779
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    ||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |  ||| |||||||||||||||||    
T  4407872 ctaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggtatgatattgcttgacc--agacgctttagtaagaaagat 4407779  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 440
Target Start/End: Complemental strand, 30061581 - 30061499
Alignment:
Q  359 agaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaa 440  Q
    |||||| |||||||| |  ||||||||||| ||||| | | |||||||||||||| || ||||||||| | ||||||||||||    
T  30061581 agaattaaatacttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgatcagacaagctttagtaa 30061499  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 323 - 351
Target Start/End: Complemental strand, 4407926 - 4407898
Alignment:
Q  323 aagtcacatgttaagaaggtagcaatgaa 351  Q
    |||||||||||||||||||||||||||||    
T  4407926 aagtcacatgttaagaaggtagcaatgaa 4407898  T

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Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 353 - 448
Target Start/End: Complemental strand, 26981130 - 26981034
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 448  Q
    |||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26981130 ctaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagctttagtaagaaagata 26981034  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 353 - 447
Target Start/End: Complemental strand, 26083998 - 26083903
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    ||||| |||||||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  26083998 ctaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 26083903  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 447
Target Start/End: Complemental strand, 5334363 - 5334273
Alignment:
Q  358 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| | ||  |||| ||||||||||    
T  5334363 gagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggtatgatattgtttgatcagataatttttaataagaaagat 5334273  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 42932773 - 42932716
Alignment:
Q  390 attaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    |||| |||||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  42932773 attaggttaaaattaggatatgatattgcttgatcagacaagctttagtaagaaagat 42932716  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 7496788 - 7496756
Alignment:
Q  417 gcttgatcaaagaagctttagtaagaaagataa 449  Q
    ||||||||||| |||||||||||||||||||||    
T  7496788 gcttgatcaaacaagctttagtaagaaagataa 7496756  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 356 - 448
Target Start/End: Complemental strand, 31442609 - 31442516
Alignment:
Q  356 aggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 448  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||| ||||||||||||||||||||    
T  31442609 aggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 361 - 447
Target Start/End: Original strand, 20915980 - 20916067
Alignment:
Q  361 aatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| | |||||||||||||||||||    
T  20915980 aatttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 447
Target Start/End: Original strand, 7867948 - 7868018
Alignment:
Q  378 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  7867948 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagtaagaaagat 7868018  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 447
Target Start/End: Complemental strand, 6698025 - 6697935
Alignment:
Q  358 gagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||| ||||||| ||||||||| || | ||| |||||||||||||||    
T  6698025 gagaatttaatgcttgcatgatggagggaaaatattaggttaaaattaaggtatgagattgcttgaccagacaagttttagtaagaaagat 6697935  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 9045218 - 9045160
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggaggg-aaatattaagttaaaattagggtat 410  Q
    ||||||||||||||||  || |||||||||||| |||||||| ||||||||||||||||    
T  9045218 ctaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggtat 9045160  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 11582669 - 11582599
Alignment:
Q  353 ctaaggagaatttaatacttggatgatggagggaaa-tattaagttaaaattagggtatgatattgcttga 422  Q
    ||||| ||||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  11582669 ctaagaagaatttaatgtttggatgacggagggaaaatattaggttaaaattagggtatgatattgcttga 11582599  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 2241513 - 2241569
Alignment:
Q  394 agttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagataag 450  Q
    ||||||||||| ||||||| |||||||||  ||| |||||||||||||||| |||||    
T  2241513 agttaaaattaaggtatgaaattgcttgacgaaacaagctttagtaagaaaaataag 2241569  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 39484801 - 39484881
Alignment:
Q  371 ttggatgatggagggaaa-tattaagttaaaattagggt-atgatattgcttgatcaaagaagctttagtaagaaagataa 449  Q
    |||| ||||||||||||| ||||| ||||||| |||||| |  |||| |||||| |||| |||||||||||||||||||||    
T  39484801 ttgggtgatggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagataa 39484881  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 448
Target Start/End: Complemental strand, 15291530 - 15291460
Alignment:
Q  378 atggagggaaatattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 448  Q
    ||||||||||| |||| ||||| |||||||||    || |||||| |||| ||||||||||||||||||||    
T  15291530 atggagggaaaaattaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 38996518 - 38996590
Alignment:
Q  376 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    ||||||||||||| ||||| |||||||||||||||  |||| ||||||||| | |||||||||||||||||||    
T  38996518 tgatggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 448
Target Start/End: Original strand, 22625385 - 22625458
Alignment:
Q  376 tgatggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagata 448  Q
    ||||||||||||| ||||| ||||||||||||||||   ||||||||| || | ||| ||||||||||||||||    
T  22625385 tgatggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 28125606 - 28125536
Alignment:
Q  378 atggagggaaa-tattaagttaaaattagggtatgatattgcttgatcaaagaagctttagtaagaaagat 447  Q
    ||||||||||| ||||| | | |||||||||||||| || |||||| || | |||||||||||||||||||    
T  28125606 atggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

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