View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21272_low_3 (Length: 392)

Name: NF21272_low_3
Description: NF21272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21272_low_3
NF21272_low_3
[»] chr1 (9 HSPs)
chr1 (17-386)||(51803783-51804135)
chr1 (140-386)||(51807841-51808088)
chr1 (185-387)||(51772312-51772514)
chr1 (154-387)||(51780148-51780370)
chr1 (27-134)||(51807679-51807786)
chr1 (30-86)||(51772101-51772157)
chr1 (218-365)||(12196175-12196322)
chr1 (27-72)||(51779983-51780028)
chr1 (166-268)||(51761303-51761406)
[»] scaffold0710 (2 HSPs)
scaffold0710 (154-387)||(6790-7014)
scaffold0710 (27-72)||(6625-6670)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 51803783 - 51804135
Alignment:
Q  17 aaagcgcagcaggaaggccgatagtctctcacaaagagtccaagagcatggtgagtacccttgcaagacttggttgggtttcaaagagatatggtacaat 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||                      
T  51803783 aaagcgcagcaggaaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagacttggttgggtttc------------------ 51803864  T
Q  117 ttatgaaaaccattttccttttgtatctaattctatgtatataactctgaaaa-tttcagtgagatcgggagcaaacatatctaaaacaataaagaggac 215  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51803865 ttatgaaaaccattttccttttgtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggac 51803964  T
Q  216 gttgagcttaggggctcaaattcttcaaatgggcggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcg 315  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  51803965 gttgaacttaggggctcaaattcttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcg 51804064  T
Q  316 cagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgcctt 386  Q
    ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  51804065 cagtgttatctttccaccacatccggtcctctatctggtctcctcttcatctccaatgaaaaggtggcctt 51804135  T

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Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 140 - 386
Target Start/End: Original strand, 51807841 - 51808088
Alignment:
Q  140 tatctaattctatgtatataactctgaaaa-tttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgagcttaggggctcaaattc 238  Q
    ||||||||||||| |  ||||||||||||| |||||||||||   ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  51807841 tatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattc 51807940  T
Q  239 ttcaaatgggcggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtgttatctatccaccacatc 338  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51807941 ttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccaccacatc 51808040  T
Q  339 tggtcctctagctggtctgctcttcatctccaatgaaaaggttgcctt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51808041 tggtcctctagctggtctgctcttcatctccaatgaaaaggttgcctt 51808088  T

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Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 185 - 387
Target Start/End: Original strand, 51772312 - 51772514
Alignment:
Q  185 gagcaaacatatctaaaacaataaagaggacgttgagcttaggggctcaaattcttcaaatgggcggagtggagaaagtgtttacgcaatattttagtgt 284  Q
    |||||||||| ||| ||||||| ||||| |  ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||  |||||||||||    
T  51772312 gagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgt 51772411  T
Q  285 gacagaaggagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgcc 384  Q
    ||  || |  ||||| || |  ||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||    
T  51772412 gagtgaggacgagagcctgttgaaaatttcgcagtgttatctatccaccacatctggccctctagccggtctcctcttcatctccaatgagaaggttgcc 51772511  T
Q  385 ttt 387  Q
    |||    
T  51772512 ttt 51772514  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 154 - 387
Target Start/End: Original strand, 51780148 - 51780370
Alignment:
Q  154 tatataactctgaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgagcttaggggctcaaattcttcaaatgggcggag 253  Q
    ||||||| ||||||| ||||| | |||  |||||||||||| ||| ||||||||| ||||| |||||||||||||||| |||||||| || |||| ||||    
T  51780148 tatataattctgaaa-tttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggag 51780246  T
Q  254 tggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctgg 353  Q
    |||| ||| | |||| ||| |||||||||||||        |||||  | |  |||||||| || |||||||| |||||||||||||| |||||||||||    
T  51780247 tggataaattttttatgcactattttagtgtga--------gagag--tgttgaaagtttctcactgttatctttccaccacatctggccctctagctgg 51780336  T
Q  354 tctgctcttcatctccaatgaaaaggttgccttt 387  Q
     || ||||||||||||||||||||||||||||||    
T  51780337 cctcctcttcatctccaatgaaaaggttgccttt 51780370  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 51807679 - 51807786
Alignment:
Q  27 aggaaggccgatagtctctcacaaagagtccaagagcatggtgagtacccttgcaagacttggttgggtttcaaagagatatggtacaatttatgaaaac 126  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||| | || |||||  ||| |||||||| ||| || ||||||    
T  51807679 aggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaaac 51807778  T
Q  127 cattttcc 134  Q
    ||||||||    
T  51807779 cattttcc 51807786  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 51772101 - 51772157
Alignment:
Q  30 aaggccgatagtctctcacaaagagtccaagagcatggtgagtacccttgcaagact 86  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||    
T  51772101 aaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagact 51772157  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 365
Target Start/End: Complemental strand, 12196322 - 12196175
Alignment:
Q  218 tgagcttaggggctcaaattcttcaaatgggcggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgca 317  Q
    |||||||||| |||  |||||||||| | || |||||||| || ||||| | ||||   |||||||| | ||| ||||||||||||  |||||  || ||    
T  12196322 tgagcttaggagctagaattcttcaagttggaggagtggaaaaggtgttcatgcaactatttagtgtaaaagatggagagaggctactaaaagcatctca 12196223  T
Q  318 gtgttatctatccaccacatctggtcctctagctggtctgctcttcat 365  Q
     ||||||||||| || ||||||||||||||||| || || ||||||||    
T  12196222 atgttatctatcaacaacatctggtcctctagcaggcctactcttcat 12196175  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 51779983 - 51780028
Alignment:
Q  27 aggaaggccgatagtctctcacaaagagtccaagagcatggtgagt 72  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||    
T  51779983 aggaaggctgatagtctctcacaaaaagtccaagaacatggtgagt 51780028  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 51761303 - 51761406
Alignment:
Q  166 aaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgagctta-ggggctcaaattcttcaaatgggcggagtggagaaagtg 264  Q
    |||||||||||||||  ||||| |||||||||  ||||||||||||||| ||| ||   | ||||||| ||||||| || |||| | |||||||||| ||    
T  51761303 aaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaatg 51761402  T
Q  265 ttta 268  Q
    ||||    
T  51761403 ttta 51761406  T

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Target: scaffold0710 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 387
Target Start/End: Original strand, 6790 - 7014
Alignment:
Q  154 tatataactctgaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgagcttaggggctcaaattcttcaaatgggcggag 253  Q
    ||||||| ||||||| ||||| | |||  |||||||||||| ||| ||||||||| ||||| |||||||||||||||| |||||||| || |||| ||||    
T  6790 tatataattctgaaa-tttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggag 6888  T
Q  254 tggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcc--tctagct 351  Q
    |||| ||| | |||| ||| |||||||||||||      |||||    | |  |||||||| || |||||||| |||||||||||||| ||   ||||||    
T  6889 tggataaattttttatgcactattttagtgtga------gagag----tgttgaaagtttctcactgttatctttccaccacatctggcccctcctagct 6978  T
Q  352 ggtctgctcttcatctccaatgaaaaggttgccttt 387  Q
    || || ||||||||||||||||||||||||||||||    
T  6979 ggcctcctcttcatctccaatgaaaaggttgccttt 7014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 6625 - 6670
Alignment:
Q  27 aggaaggccgatagtctctcacaaagagtccaagagcatggtgagt 72  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||    
T  6625 aggaaggctgatagtctctcacaaaaagtccaagaacatggtgagt 6670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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