View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21272_low_7 (Length: 315)
Name: NF21272_low_7
Description: NF21272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21272_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 38214137 - 38213860
Alignment:
| Q |
19 |
cacagatcataatttgagaaatggttgtgttcatgtgacgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214137 |
cacagatcataatttgagaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcat |
38214038 |
T |
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| Q |
119 |
tcaggcggaattggatcaactctatatcgacaggtaatttgcaatacttacaacatacattcattcttaagtactttcaagtctcccactttctggatgc |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214037 |
tcaggcggaattggatcaactctatatggacaggtaatttgcaatacttacaacatacattcattcttaagtactttcaagtctcccactttctggatgc |
38213938 |
T |
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| Q |
219 |
attactttattcagaaagtaatagtggaagggtctaaccaataatgattctgcccctttaaagggactctagactatc |
296 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38213937 |
attgctttattcagaaagtaatagtggaagggtctaaccaataatgactctgcccctttaaagggactctagactatc |
38213860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 38226500 - 38226372
Alignment:
| Q |
35 |
agaaatggttgtgttcatgtgacgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggat |
134 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |
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| T |
38226500 |
agaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggat |
38226401 |
T |
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| Q |
135 |
caactctatatcgacaggtaatttgcaat |
163 |
Q |
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|||||||||| | |||||||||| |||| |
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| T |
38226400 |
caactctatacgggcaggtaatttacaat |
38226372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 164
Target Start/End: Complemental strand, 38253366 - 38253238
Alignment:
| Q |
36 |
gaaatggttgtgttcatgtgacgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatc |
135 |
Q |
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||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |
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| T |
38253366 |
gaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatc |
38253267 |
T |
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| Q |
136 |
aactctatatcgacaggtaatttgcaata |
164 |
Q |
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||| |||| | |||||||||||||||||| |
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| T |
38253266 |
aaccctatttggacaggtaatttgcaata |
38253238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 38238030 - 38237919
Alignment:
| Q |
44 |
tgtgttcatgtgacgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatcaactctat |
143 |
Q |
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||||||||||||| |||||||||||||||| | ||||||||||||||| | |||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
38238030 |
tgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatatgatctatggtgctgctcatcaacattcaggcggaattggatcaactctat |
38237931 |
T |
|
| Q |
144 |
atcgacaggtaa |
155 |
Q |
| |
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|| ||||||||| |
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| T |
38237930 |
atggacaggtaa |
38237919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 38243012 - 38242885
Alignment:
| Q |
37 |
aaatggttgtgttcatgtgacgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatca |
136 |
Q |
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|||||| ||||||||||||| |||||||||||||||| | ||||||||||| ||||| |||||| |||||| |||||||||||||| ||||||||||| |
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| T |
38243012 |
aaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtgatctatggtgttgcacatcagcattcaggtggaattggatcc |
38242913 |
T |
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| Q |
137 |
actctatatcgacaggtaatttgcaata |
164 |
Q |
| |
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|| |||||| |||||||||||| ||||| |
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| T |
38242912 |
accctatatggacaggtaatttccaata |
38242885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 38220158 - 38220024
Alignment:
| Q |
36 |
gaaatggttgtgttcatgtgacgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatc |
135 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||||| | ||||||||||| ||||| |||||| |||||| ||||| ||||| || ||||| ||||| |
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| T |
38220158 |
gaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtgatctatggtgttgcacatcaacattcgggtggaatcggatc |
38220059 |
T |
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| Q |
136 |
aactctatatcgacaggtaatttgcaatacttaca |
170 |
Q |
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|| |||||| |||||||||||| ||||| ||||| |
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| T |
38220058 |
caccctatatggacaggtaatttccaatagttaca |
38220024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 38248213 - 38248165
Alignment:
| Q |
36 |
gaaatggttgtgttcatgtgacgaggacaagtctcccactacaaactgg |
84 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
38248213 |
gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
38248165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 17454595 - 17454461
Alignment:
| Q |
36 |
gaaatggttgtgttcatgtgacgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatc |
135 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||||| |
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| T |
17454595 |
gaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtgatctatgctgttgctcatcaacattcagggggagttggatc |
17454496 |
T |
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| Q |
136 |
aactctatatcgacaggtaatttgcaatacttaca |
170 |
Q |
| |
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|||| ||||| |||||||||||||||||| ||||| |
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| T |
17454495 |
aactttatatggacaggtaatttgcaatagttaca |
17454461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 17433515 - 17433382
Alignment:
| Q |
37 |
aaatggttgtgttcatgtgacgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatca |
136 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
17433515 |
aaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatca |
17433416 |
T |
|
| Q |
137 |
actctatatcgacaggtaatttgcaatacttaca |
170 |
Q |
| |
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|||||||| |||||||||||||||||| ||||| |
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| T |
17433415 |
actctatacggacaggtaatttgcaatagttaca |
17433382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 11485810 - 11485878
Alignment:
| Q |
77 |
caaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatcaactctatat |
145 |
Q |
| |
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|||| |||||| ||||| |||||| |||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
11485810 |
caaaatggtggttatgtcatctatggagttggtcatcagcattcaggtgcaattggatcaactctatat |
11485878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 11479749 - 11479792
Alignment:
| Q |
110 |
catcagcattcaggcggaattggatcaactctatatcgacaggt |
153 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||| ||||||| |
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| T |
11479749 |
catcagcattcaggtgcaattggatcaactctatatggacaggt |
11479792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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