View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21272_low_8 (Length: 311)
Name: NF21272_low_8
Description: NF21272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21272_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 34257728 - 34257447
Alignment:
| Q |
15 |
agacggaatgcttgcttgcttgtagtgtaaaatgaaaatggggagtttt-gtttggcaatgcctgaccttagaagttaggtctatctatagaggccttta |
113 |
Q |
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| T |
34257728 |
agacggagtgcttgcttgcttgtagtgtaaaatgaaaatggggagtttttgtttggcaatgcctgaccttagaagttaggtctatctatagaggccttta |
34257629 |
T |
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| Q |
114 |
gaatgacgttaattagtatctgatgcattatgcatgtggggttgggcaccattatttctacactcttcttcatggcattcattaggctcttgggtgcacc |
213 |
Q |
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| T |
34257628 |
gaatgacgttaattagtatctaatgcattatgcgtgtggggttgggcaccattatttctacactcttcttcatggcattcattaggctcttgggtgcacc |
34257529 |
T |
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| Q |
214 |
ttgaagccaaagaagttgtgctattttaacacagcaattgtcgacatcgtatccaacaacaaagatgagacatggtgtgtgg |
295 |
Q |
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| T |
34257528 |
ttgaagccaaagaagttgtgctattttaacacaggaattgtcgacatcgtatccaacaacaaagatgagacatggtgtgtgg |
34257447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 34248622 - 34248550
Alignment:
| Q |
33 |
cttgtagtgtaaaatgaaaatggggag-ttttgtttggcaatgcctgaccttagaagttaggtctatctatag |
104 |
Q |
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| T |
34248622 |
cttgtagtgtaaaatgaaaatggggagtttttgtttggctatgattgaccttaggagttaggtctatctatag |
34248550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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