View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21273_high_2 (Length: 330)
Name: NF21273_high_2
Description: NF21273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21273_high_2 |
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| [»] scaffold0158 (4 HSPs) |
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| [»] scaffold0001 (2 HSPs) |
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| [»] scaffold0035 (4 HSPs) |
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Alignment Details
Target: scaffold0158 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 36313 - 36199
Alignment:
| Q |
201 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttcattcaattggat |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| |
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| T |
36313 |
ccaaattcagtcattgttgttctaattccaaaataagctgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaattggat |
36214 |
T |
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| Q |
301 |
tgttgtggttctctg |
315 |
Q |
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|||||| |||||||| |
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| T |
36213 |
tgttgttgttctctg |
36199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 36494 - 36351
Alignment:
| Q |
19 |
agcttggcctataaataggtccagaaaggaaaagttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaagtttcagt |
118 |
Q |
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||||||||||||||||||||||||| ||||| || || || ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
36494 |
agcttggcctataaataggtccagagaggaagagctgcgg-agagaagtttttaggcaagcattagaaattcataactgattgtaatcctaagtttcagt |
36396 |
T |
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| Q |
119 |
ttccttttcattcacagtttgttacaatcgtactgtttcatttca |
163 |
Q |
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|||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
36395 |
ttccttttcattcacagtacgatacaatcgtactgttttatttca |
36351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 28591 - 28477
Alignment:
| Q |
201 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttcattcaattggat |
300 |
Q |
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| T |
28591 |
ccaaattcagtcattgttgttctaattccaaaataagttgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaattggat |
28492 |
T |
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| Q |
301 |
tgttgtggttctctg |
315 |
Q |
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|| ||| |||||||| |
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| T |
28491 |
tgctgttgttctctg |
28477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 28769 - 28629
Alignment:
| Q |
21 |
cttggcctataaataggtccagaaaggaaaagttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaagtttcagttt |
120 |
Q |
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||||||||||||||||||||||| ||||| || || || ||| ||||||||||||||| |||||||| || |||||||||||| ||||||||||||||| |
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| T |
28769 |
cttggcctataaataggtccagagaggaagagctgcgg-agagaagtttttaggcaagctttagaaatgcataactgattgtaatcctaagtttcagttt |
28671 |
T |
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| Q |
121 |
ccttttcattcacagtttgttacaatcgtactgtttcatttca |
163 |
Q |
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| T |
28670 |
ccttttcatttacagttt-atacaatcgtactgttttatttca |
28629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 186315 - 186458
Alignment:
| Q |
19 |
agcttggcctataaataggtccagaaaggaaaagttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaagtttcagt |
118 |
Q |
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||||||||||||||||||||||||| ||||| || || || ||| || |||||| ||||||||||||||||| | | |||||||| ||||||||||||| |
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| T |
186315 |
agcttggcctataaataggtccagagaggaagagctgagg-agagaagcttttagacaagcattagaaattcatagccgattgtaatcctaagtttcagt |
186413 |
T |
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| Q |
119 |
ttccttttcattcacagtttgttacaatcgtactgtttcatttca |
163 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
186414 |
ttccttttcattcacagtttgatacaatcgtactgttttatttca |
186458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 186487 - 186574
Alignment:
| Q |
201 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
288 |
Q |
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|||||||||||||| | |||||||||||| |||||||||| ||| ||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
186487 |
ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttc |
186574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 97656 - 97509
Alignment:
| Q |
19 |
agcttggcctataaataggtccagaaaggaaaagtt---gggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaagtttc |
115 |
Q |
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||||||||||||||||||||| ||||| | |||| |||||||||| ||||||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
97656 |
agcttggcctataaataggtctagaaaaggaaaggaaaagggggagaag--tttttaggcaagcattagaaattcatagctgattgtaatcctaagtttc |
97559 |
T |
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| Q |
116 |
a--gtttccttttcattcacagtttgttacaatcgtactgtttcatttca |
163 |
Q |
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| |||||||||||||||||||||| |||||||||||| ||| |||||| |
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| T |
97558 |
aagttttccttttcattcacagtttgatacaatcgtactattttatttca |
97509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 87916 - 87816
Alignment:
| Q |
65 |
agtttttaggcaagcattagaaattcacaactgattgtaaccctaagtttca--gtttccttttcattcacagtttgttacaatcgtactgtttcatttc |
162 |
Q |
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||||||||||||| ||||||||||||| | |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||| |
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| T |
87916 |
agtttttaggcaaacattagaaattcatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtactattttatttc |
87817 |
T |
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| Q |
163 |
a |
163 |
Q |
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| T |
87816 |
a |
87816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 87780 - 87700
Alignment:
| Q |
208 |
cagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
288 |
Q |
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||||||| | |||||||||||| || ||||||| |||||||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
87780 |
cagtcatcgctgttctaattccgaattaagctgctgccgtgttatttatttctctgttgctgcggtttggaatgggtgttc |
87700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 97473 - 97393
Alignment:
| Q |
208 |
cagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
288 |
Q |
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||||||| | |||||||||||| || ||||||| || ||||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
97473 |
cagtcatcgttgttctaattccgaattaagctgctgtcgtgttatttatttctctgttgctgcggtttggaatgggtgttc |
97393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 18477762 - 18477697
Alignment:
| Q |
67 |
tttttaggcaagcattagaaattcacaactgattgtaaccctaagtttc-agtttccttttcattc |
131 |
Q |
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||||||||||||||||||||||||| | || ||||||| |||||||||| |||||||||||||||| |
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| T |
18477762 |
tttttaggcaagcattagaaattcatagcttattgtaatcctaagtttcaagtttccttttcattc |
18477697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 18487858 - 18487793
Alignment:
| Q |
67 |
tttttaggcaagcattagaaattcacaactgattgtaaccctaagtttc-agtttccttttcattc |
131 |
Q |
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||||||||||||||||||||||||| | | ||||||| |||||||||| |||||||||||||||| |
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| T |
18487858 |
tttttaggcaagcattagaaattcatagcatattgtaatcctaagtttcaagtttccttttcattc |
18487793 |
T |
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