View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21273_high_3 (Length: 315)
Name: NF21273_high_3
Description: NF21273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21273_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 31621215 - 31621516
Alignment:
| Q |
1 |
tgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattagg |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31621215 |
tgagtttctgtgttgtattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattagg |
31621314 |
T |
|
| Q |
101 |
atcagaaacac---cacaactctcttctctgtttcctccccagaatggatacttgatgtctgtgatgctgctacttccgcattcaaaagcttcgttgcag |
197 |
Q |
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||||||||||| |||||| |||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
31621315 |
atcagaaacactaccacaacgctcttctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcag |
31621414 |
T |
|
| Q |
198 |
tctgtgtaatcatcgcacatacatgtcggaatattgatgattgagattatcaaaatggtgaaggagaaaaatgaaataataatggaagaagatggataat |
297 |
Q |
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||||||||||||| ||||||||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31621415 |
tctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcatcaaaatggtgaaggagaaaaatgaaataataatggaagaagatggataat |
31621514 |
T |
|
| Q |
298 |
ga |
299 |
Q |
| |
|
|| |
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|
| T |
31621515 |
ga |
31621516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 31636210 - 31636464
Alignment:
| Q |
1 |
tgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattagg |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31636210 |
tgagtttctgtgttgtattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattagg |
31636309 |
T |
|
| Q |
101 |
atcagaaac---accacaactctcttctctgtttcctccccagaatggatacttgatgtctgtgatgctgctacttccgcattcaaaagcttcgttgcag |
197 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
31636310 |
atcagaaacactaccacaacgctcttctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcag |
31636409 |
T |
|
| Q |
198 |
tctgtgtaatcatcgcacatacatgtcggaatattgatgattgagattatcaaaa |
252 |
Q |
| |
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||||||||||||| ||||||||| || |||||||||||||| |||| ||||||| |
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| T |
31636410 |
tctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcatcaaaa |
31636464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 31616469 - 31616779
Alignment:
| Q |
1 |
tgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattagg |
100 |
Q |
| |
|
||||||||||| || ||| | ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31616469 |
tgagtttctgtattatatcattccaatcatgaatacggtatttggcgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattagg |
31616568 |
T |
|
| Q |
101 |
atc---agaaacaccacaactctcttct---ctgtttcctccccagaatggatacttgatgtctgtgatgctgctacttccgcattcaaaagcttcgttg |
194 |
Q |
| |
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||| ||||||||||| || | || | || ||| |||||||||||||||||||||||| ||||||||| |||||||| | |||||| | ||| |
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| T |
31616569 |
atcagaagaaacaccaccacaatattttttcctattttctccccagaatggatacttgatgttcgtgatgctg---cttccgcagttaaaagcgttgtta |
31616665 |
T |
|
| Q |
195 |
cagtctgtgta---------atcatcgcacatacatgtcggaatattgatgattgagattatcaaaatggtgaaggagaaaaatgaaataataatggaag |
285 |
Q |
| |
|
|||| |||||| |||||| |||||||| || |||||||||||||||||||| | ||||| |||||||||||| || |||||||||||||||| |
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| T |
31616666 |
cagtttgtgtattggtcgtcatcatcacacatacacgttggaatattgatgattgagatcaacaaaagggtgaaggagaataaggaaataataatggaag |
31616765 |
T |
|
| Q |
286 |
aagatggataatga |
299 |
Q |
| |
|
||||||||| |||| |
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|
| T |
31616766 |
aagatggatgatga |
31616779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 31606544 - 31606854
Alignment:
| Q |
1 |
tgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattagg |
100 |
Q |
| |
|
||||||| ||| || ||| || ||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31606544 |
tgagtttttgtattgtatcgttccaatcaagaatgcggtatttgacgtcgttgatatttatctttggaacactttcttcgcatgtaagatccatattagg |
31606643 |
T |
|
| Q |
101 |
atc---agaaacaccacaactctctt---ctctgtttcctccccagaatggatacttgatgtctgtgatgctgctacttccgcattcaaaagcttcgttg |
194 |
Q |
| |
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||| ||||||||||| || | || |||| ||| |||||||||||||||||||||||| | ||||||||| |||||| | |||||| | |||| |
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| T |
31606644 |
atcggaagaaacaccaccacaatatttatctctattttctccccagaatggatacttgatgttcgcgatgctgct---tccgcagttaaaagcattgttg |
31606740 |
T |
|
| Q |
195 |
cagtctgtgta---------atcatcgcacatacatgtcggaatattgatgattgagattatcaaaatggtgaaggagaaaaatgaaataataatggaag |
285 |
Q |
| |
|
|||| |||||| || |||||||| ||| || || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
31606741 |
cagtttgtgtattggtcatcataatcgcacaaacaagttgggatattgatgattgagattatcaaaagggtgaaggagaaaaaggaaataataatggaag |
31606840 |
T |
|
| Q |
286 |
aagatggataatga |
299 |
Q |
| |
|
||||||||| |||| |
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|
| T |
31606841 |
aagatggatgatga |
31606854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 31610374 - 31610554
Alignment:
| Q |
1 |
tgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattagg |
100 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||| ||| || |||||||| || |||||| |||||||| |||||||| ||||| |
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| T |
31610374 |
tgagtctctgtgttgtattgtcccattcaagaatacggtatttgaccaaattaattgttatcttagggacacttccttcgcatacgagctccatcttagg |
31610473 |
T |
|
| Q |
101 |
at---cagaaacaccacaactctcttctctgtttcctccccagaatggatacttgatgtctgtgatgctgctacttccgca |
178 |
Q |
| |
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|| |||||||||||||| || ||||||||||||||||||| | |||||||||| || || ||||||||||||| |||| |
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| T |
31610474 |
atcaccagaaacaccacaatacttttctctgtttcctccccagtacggatacttgaggtttgagatgctgctactttcgca |
31610554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 31597365 - 31597496
Alignment:
| Q |
17 |
attgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacaccacaa |
116 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||| |||||| |||||||| || || || ||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
31597365 |
attgttccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttccttcgcatgtaagcttcatattaggatcggaaacaccacaa |
31597464 |
T |
|
| Q |
117 |
ctctcttctctgtttcctccccagaatggata |
148 |
Q |
| |
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| | |||| ||| |||||||||||||||| |
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|
| T |
31597465 |
taatttcctctattttctccccagaatggata |
31597496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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