View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21273_low_1 (Length: 348)
Name: NF21273_low_1
Description: NF21273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21273_low_1 |
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| [»] scaffold0813 (1 HSPs) |
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Alignment Details
Target: scaffold0813 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 4051 - 3728
Alignment:
| Q |
18 |
aaatgctcatcgtctacctactcctggtagacatcacaggaccaactaaagcaaacatgtcaacctcttgcggctttgatctccatgatttcctgtacga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4051 |
aaatgctcatcgtctacctactcctggtagacatcacaggaccaactaaagcaaacatgtcaacctcttgcggcttcgatctccatgatttcctgtacga |
3952 |
T |
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| Q |
118 |
gttttgacccctggaataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951 |
gttttgacccctggaataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactc |
3852 |
T |
|
| Q |
218 |
atccaacacgatcttcatctccataggaagtaggtggaaactgtccatctgtctatgccacctctcaacaaactcaaacatcagacccttgtctaccatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3851 |
atccaacacgatcttcatctccataggaagtaggtggaaactgtccatctgtctatgccacctctaaacaaactcaaacatcagacccttgtctaccatg |
3752 |
T |
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| Q |
318 |
ttcggtatgtactcgtgacctatg |
341 |
Q |
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||||||||||||||||| |||||| |
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| T |
3751 |
ttcggtatgtactcgtggcctatg |
3728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 6617931 - 6618254
Alignment:
| Q |
18 |
aaatgctcatcgtctacctactcctggtagacatcacaggaccaactaaagcaaacatgtcaacctcttgcggctttgatctccatgatttcctgtacga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6617931 |
aaatgctcatcgtctacctactcctggtagacatcacaggaccaactaaagcaaacatgtcaacctcttgcggcttcgatctccatgatttcctgtacga |
6618030 |
T |
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| Q |
118 |
gttttgacccctggaataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6618031 |
gttttgacccctggaataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactc |
6618130 |
T |
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| Q |
218 |
atccaacacgatcttcatctccataggaagtaggtggaaactgtccatctgtctatgccacctctcaacaaactcaaacatcagacccttgtctaccatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6618131 |
atccaacacgatcttcatctccataggaagtaggtggaaactgtccatctgtctatgccacctctaaacaaactcaaacatcagacccttgtctaccatg |
6618230 |
T |
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| Q |
318 |
ttcggtatgtactcgtgacctatg |
341 |
Q |
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||||||||||||||||| |||||| |
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| T |
6618231 |
ttcggtatgtactcgtggcctatg |
6618254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 6773250 - 6773070
Alignment:
| Q |
24 |
tcatcgtctacctactcctggtagacatcacaggaccaactaaagcaaacatgtcaacctcttgcggctttgatctccatgatttcctgtacgagttttg |
123 |
Q |
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||||| |||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||| || | ||||||||||||||||||||| ||||||| |
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| T |
6773250 |
tcatcatctaactactccaggtagacatcacgcaaccaactaaagcaaacatgtgaacctcttgttgcctcgatctccatgatttcctgtacaagttttg |
6773151 |
T |
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| Q |
124 |
acccctgga----ataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgt |
200 |
Q |
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||| || || ||||||||| |||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |
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| T |
6773150 |
acctcttgaattcataaataagaccacaccatgtttctacatacgaaatatgatatgaaggcactagtgtttggtagatgt |
6773070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 165 - 340
Target Start/End: Original strand, 6526525 - 6526697
Alignment:
| Q |
165 |
agatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactcatccaacacgatcttcatctccataggaagtaggtggaaactgtcca |
264 |
Q |
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|||||||| | ||| |||| |||||||||||||||| ||| ||||| |||| ||||| |||||||||||||| ||| ||| |||||||||||||| |
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| T |
6526525 |
agatatgagacgaaagcaccagtgtttggtagatgtggtacccatgat---tcatacaacatgatcttcatctccacaggcagtgggtggaaactgtccg |
6526621 |
T |
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| Q |
265 |
tctgtctatgccacctctcaacaaactcaaacatcagacccttgtctaccatgttcggtatgtactcgtgacctat |
340 |
Q |
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||| | |||| | ||||||||||||||| |||| |||| |||||||||||||| |||| |||||||| ||||| |
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| T |
6526622 |
tctctttatgacgtctctcaacaaactcagacatgagacatatgtctaccatgttctgtatatactcgtgtcctat |
6526697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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