View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21273_low_8 (Length: 228)
Name: NF21273_low_8
Description: NF21273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21273_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 48092962 - 48092767
Alignment:
| Q |
18 |
atacatttaaaccaatttcattgttgagttgttggattatttgaataagttgtggattgaacaaagctgctgcacgttgtagctcaactgagcatccccc |
117 |
Q |
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| T |
48092962 |
atacatttgaaccaatttcattgttgagttgttggattatttgaataagttgtggattgaacaaagctgctgcacgttgtagctcaactgagcatccccc |
48092863 |
T |
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| Q |
118 |
atttgtgcctcgttgtgctaattctgctggaacacaaccaattggacctgttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
213 |
Q |
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| T |
48092862 |
atttgtgcctcgttgtgctaattctgctggaacacaaccaattggacctgttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
48092767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 13324848 - 13324929
Alignment:
| Q |
18 |
atacatttaaaccaatttcattgttgagttgttggattatttgaataagttgtggattgaacaaagctgctgcacgttgtag |
99 |
Q |
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| T |
13324848 |
atacatttgaaccaatttcattgttgagttcttgaattatttgaataagttgtggattgaacaaagctgctgcacgttgtag |
13324929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 5666721 - 5666802
Alignment:
| Q |
18 |
atacatttaaaccaatttcattgttgagttgttggattatttgaataagttgtggattgaacaaagctgctgcacgttgtag |
99 |
Q |
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| T |
5666721 |
atacatttgaaccaatttcattgttgagttcttgaattatttgaataagttgtggattgaacaaagctgctgcacgttgtag |
5666802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 35354416 - 35354495
Alignment:
| Q |
134 |
gctaattctgctggaacacaaccaattggacctgttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
213 |
Q |
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|||||| |||||||| ||||||| |||||||||||||||| ||| | ||||||||||||||||||| ||||||||||| |
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| T |
35354416 |
gctaatgctgctggagcacaacccattggacctgttcctgacaccagaaccctacgtgctccaagatgatatagtctctg |
35354495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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