View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_high_23 (Length: 279)
Name: NF21275_high_23
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 11731948 - 11731692
Alignment:
| Q |
16 |
caatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtgg |
115 |
Q |
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| T |
11731948 |
caatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtgg |
11731849 |
T |
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| Q |
116 |
aagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgctataaacatcgaatctggaatcccacacgaaagatccaaacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11731848 |
aagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgctataaacatcgaatctggaatcccacacgaaagatccaaacca |
11731749 |
T |
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| Q |
216 |
aaatcaaacgaagctcgcagcattccttcttcaactttttctccctttgattctaca |
272 |
Q |
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| T |
11731748 |
aaatcaaacgaagctcgcagcattccttcttcaactttttctccctttgaatctaca |
11731692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 11902256 - 11902479
Alignment:
| Q |
18 |
atcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaa |
117 |
Q |
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| T |
11902256 |
atcttaatccccaagtcatgtagatccagcacacgtagggacttgaaggtgttgaagatcttatcgcatgttgatgttgtcatcttcacctcgtgtggaa |
11902355 |
T |
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| Q |
118 |
gccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgctata---aacatcgaatctggaatcccacacgaaagatccaaacc |
214 |
Q |
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| T |
11902356 |
ggcgagggttgttagtg---ctgtacggcaaaagaatggttctcagtttctttgctttatcgaacaacaagtctgggatcccacatgacagatccaaagc |
11902452 |
T |
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| Q |
215 |
aaaatcaaacgaagctcgcagcattcc |
241 |
Q |
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| T |
11902453 |
aaaatcaaatgaagctcgcaacattcc |
11902479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 11828165 - 11827945
Alignment:
| Q |
19 |
tcttgatccccaagtcatgtagatccaacacgtgcatgga---cttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtgg |
115 |
Q |
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|||||||||||||||||||||||||||||||| | | || ||||||||||| ||||||||||||||| |||| ||| |||||||| |||||||| || |
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| T |
11828165 |
tcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaaggtgtcgaagatcttatcacaagttgacgttgtcatctttacctcgtgcgg |
11828066 |
T |
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| Q |
116 |
aagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgctat---aaacatcgaatctggaatcccacacgaaagatccaaa |
212 |
Q |
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||| ||||||||||||||| ||||||||||| | ||||||||| |||||||||||| | ||||| |||||| || ||| |||| |||||||| ||| |
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| T |
11828065 |
aagacgagggttgttaatg---ttgtatggcaaaagaatggtccttagtttctttgctgtctgaaacaccgaatcagggatctcacatgaaagatctaaa |
11827969 |
T |
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| Q |
213 |
ccaaaatcaaacgaagctcgcagc |
236 |
Q |
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|||||| |||||| |||||||| |
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| T |
11827968 |
gcaaaattgaacgaaactcgcagc |
11827945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 11860300 - 11860070
Alignment:
| Q |
19 |
tcttgatccccaagtcatgtagatccaacacgtgcatgga---cttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtgg |
115 |
Q |
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||||||||||||| |||||||||||||||||| | | || ||||||||||| ||||||||||||||| |||| || |||| ||| ||||||| || |
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| T |
11860300 |
tcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttatcacaagttgatgttgtcacctttacctcgtacgg |
11860201 |
T |
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| Q |
116 |
aagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgctat---aaacatcgaatctggaatcccacacgaaagatccaaa |
212 |
Q |
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||||||||||||||||||| ||||||||||| | || |||||| |||||||||||| | ||||| | |||| || ||| |||| |||||||| ||| |
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| T |
11860200 |
aagccgagggttgttaatg---ttgtatggcaaaagaaaggtccttagtttctttgctttctgaaacaccaaatcagggatctcacatgaaagatctaaa |
11860104 |
T |
|
| Q |
213 |
ccaaaatcaaacgaagctcgcagcattccttctt |
246 |
Q |
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||||||| |||||| ||||||||||||| |||| |
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| T |
11860103 |
gcaaaatcgaacgaaactcgcagcattccatctt |
11860070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 12039065 - 12038843
Alignment:
| Q |
19 |
tcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaag |
118 |
Q |
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||||||||||||||||||| | ||| |||||| |||| | ||||||||||| ||||||||||||||||||| || ||||||| ||||||| ||||| |
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| T |
12039065 |
tcttgatccccaagtcatgcatatctaacacgcgcatagctttgaaggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaag |
12038966 |
T |
|
| Q |
119 |
ccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgctat---aaacatcgaatctggaatcccacacgaaagatccaaacca |
215 |
Q |
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||||||||||| | || ||||||||||| | ||||||||||||||| || ||| | ||||| ||||||| ||||||||| | | ||| ||| || |
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| T |
12038965 |
ccgagggttgtcagtg---ttgtatggcaaaagaatggtcctcagttttttagctttctcaaacacacaatctgggatcccacacaacaaatctaaagca |
12038869 |
T |
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| Q |
216 |
aaatcaaacgaagctcgcagcattcc |
241 |
Q |
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||||||||||| |||| |||||||| |
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| T |
12038868 |
taatcaaacgaaactcgtagcattcc |
12038843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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