View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_high_24 (Length: 278)
Name: NF21275_high_24
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 34933422 - 34933683
Alignment:
| Q |
1 |
atatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaag |
100 |
Q |
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| T |
34933422 |
atatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgagtgaagcaacgattatgaaaatatgattgaaag |
34933521 |
T |
|
| Q |
101 |
agatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattcaacaaattcttctcattctacttataagaagcttcaacccaagagattacg |
200 |
Q |
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| T |
34933522 |
agatacaaacgaaaactgtcatgcaatgcaaccctagagag---------acaaattcttctcattctacttataagaagcttcaaccctagagattacg |
34933612 |
T |
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| Q |
201 |
aacgaaaactgtcatgcaatgaaaatacatagataccttggagcttcttcttcttctacaacttcttctca |
271 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34933613 |
aacgaaaactatcatgcaatgaaaatacatagatacgttggagcttcttcttcttctacaacttcttctca |
34933683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 51 - 271
Target Start/End: Original strand, 34926958 - 34927175
Alignment:
| Q |
51 |
acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca |
150 |
Q |
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|||||||||||||| || ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34926958 |
acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca |
34927057 |
T |
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| Q |
151 |
acaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaaatacatagataccttggagcttcttc |
250 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| || |||| |
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| T |
34927058 |
acaaattcttctcattctacgtataagaagcttcaaccctagagattacgaaaaaaaactgtcatgcaatgaaattacatagataccttcaag---cttc |
34927154 |
T |
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| Q |
251 |
ttcttctacaacttcttctca |
271 |
Q |
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||||||||||||||||||||| |
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| T |
34927155 |
ttcttctacaacttcttctca |
34927175 |
T |
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