View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_high_3 (Length: 626)
Name: NF21275_high_3
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 18 - 619
Target Start/End: Complemental strand, 3852372 - 3851771
Alignment:
| Q |
18 |
taactaagctataagttcttttaggagtactaatccaactcggtacattagagtttacaacactcacacacatcgcgctagaccagaccacgatgatggt |
117 |
Q |
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| T |
3852372 |
taactaagctataagttcttttaggagtactaatccaacttggtacattagagtttacaacactcacacacatcgcgctagaccagaccacgatgatggt |
3852273 |
T |
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| Q |
118 |
gtggtatggataattggatatcactatatatttgagtagttgttttcttactttatgacatttgggtaaagttagtatatgattattannnnnnnn--gt |
215 |
Q |
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| T |
3852272 |
gtggtatggataattggatatcactatatatttgagtagttgttttcttactttatgacatttgggtaaagttagtatatgattattattttttttttgt |
3852173 |
T |
|
| Q |
216 |
tttaaagtagctaggtaaaagcatt-gtattatctttatcagtagcataacttatgatatatgttttcaccaactgtatagtatgatgatgtatggtggc |
314 |
Q |
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| T |
3852172 |
tttaaagtagctaggtaaaagcatttgtattatctttatcagtagcataacttatgatatatgttttcaccaactgtatagtatgatg---tatggtggc |
3852076 |
T |
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| Q |
315 |
atttaatttggcttctcttcattgtacttaatttggcttctcttctcttctcaaagtaactaaccaactagaagcaatatacttcctttgtcacaagcct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852075 |
atttaatttggcttctcttcattgtacttaatttggcttctcttctcttctcaaagtaactaaccaactagaagcaatatacttcctttgtcacaagcct |
3851976 |
T |
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| Q |
415 |
aaagatattatcacatacatcaaaattcatattataattcattttatttaagcttgtaaccaaacaagcacttactagatgccttcaaacttgcaatgca |
514 |
Q |
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| T |
3851975 |
aaagatattatcacatacatcaaaattcatattataattcattttatttaagcttgtaaccaaacaagcacttactagatgccttcaaacttgcaatgca |
3851876 |
T |
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| Q |
515 |
aaaatgtgtgtgttggggatttggttgtggacctgactgaccgaccatcaaacagttttttcacgtttgtaaggactgaaatattccaattccatttctg |
614 |
Q |
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| T |
3851875 |
aaaatgtctgtgttggggatttgtttgtggacctgactgaccgaccatcaaacagttttttcacgtttgtaaggactgaaatattccaattccatttatg |
3851776 |
T |
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| Q |
615 |
tgctc |
619 |
Q |
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| T |
3851775 |
tgctc |
3851771 |
T |
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