View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_high_31 (Length: 239)
Name: NF21275_high_31
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_high_31 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 923868 - 924089
Alignment:
| Q |
1 |
taataataattaatttgaaaatgtaggaaagggtggaacatgggtggatgttggaaatgccggcagggtgcaacagctgctttttatatattggccatat |
100 |
Q |
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| T |
923868 |
taataataattaatttgaaaatgtaggaaagggtggaacatgggtggatgttggaaatgccggcagggtgcaacagctgctttttatatattggccatat |
923967 |
T |
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| Q |
101 |
gatgcaagtgatacacaattgcatgattatcgaaatctggctttgttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcacaa |
200 |
Q |
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| T |
923968 |
gatgcaagtgatacacaattacatgattatcgaaatctggctttgttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcacaa |
924067 |
T |
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| Q |
201 |
agacctcagattatggagcaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
924068 |
agacctcagattatggagcaac |
924089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 915826 - 916030
Alignment:
| Q |
1 |
taataataattaatttgaaaatgtaggaaagggtggaacatgggtggatgttggaaatgccggcagggtgcaacagctgctttttatatattggccatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| | ||| |||||| ||||||||||||||||||||||||| |
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| T |
915826 |
taataataattaatttgaaaatgtaggaaagggtggaacatcgatggatgttggaaaagccagaaggatgcaaccgctgctttttatatattggccatat |
915925 |
T |
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| Q |
101 |
gatgcaagtgatacacaattgcatgattatcgaaatctggctttgttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcacaa |
200 |
Q |
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| T |
915926 |
gatgcaagtgttacacaattacatgattatcaaaatctggacttgttcttctttgaaaaggacttgcacaatggtacaaaattgaacatgcaattcacaa |
916025 |
T |
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| Q |
201 |
agacc |
205 |
Q |
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||||| |
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| T |
916026 |
agacc |
916030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 909433 - 909544
Alignment:
| Q |
99 |
atgatgcaagtgatacacaattgcatgattatcgaaatctggctttgttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcac |
198 |
Q |
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||||||||| ||| || |||| |||||| |||||||| ||||| ||||||| || ||||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
909433 |
atgatgcaaatgaagcagaattacatgataatcgaaatttggctatgttcttattggaaaaggacttgcatcatggtacaaaattcaacatacaattcac |
909532 |
T |
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| Q |
199 |
aaagacctcaga |
210 |
Q |
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| T |
909533 |
aaagacctcaga |
909544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 901756 - 901833
Alignment:
| Q |
138 |
tggctttgttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcacaaagacctcagattatg |
215 |
Q |
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|||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
901756 |
tggccttgttcttcttggaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacctcaaattatg |
901833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 420125 - 420066
Alignment:
| Q |
146 |
ttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcacaaagacc |
205 |
Q |
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||||| || ||||||||||||||| |||| |||||| ||||| |||||||||| |||||| |
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| T |
420125 |
ttctttttggaaaaggacttgcatcatggaacaaaactgaacttgcaattcactaagacc |
420066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 10446 - 10505
Alignment:
| Q |
146 |
ttcttctttgaaaaggacttgcataatggtacaaaattgaacatgcaattcacaaagacc |
205 |
Q |
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||||| || ||||||||||||||| |||| |||||| ||||| |||||||||| |||||| |
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| T |
10446 |
ttctttttggaaaaggacttgcatcatggaacaaaactgaacttgcaattcactaagacc |
10505 |
T |
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