View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_high_32 (Length: 237)
Name: NF21275_high_32
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 7583836 - 7583752
Alignment:
| Q |
137 |
gcaaagaactcacttgcaaaaactctgcatatttcgaatgaccagtaaaagatcttccatttactttggtgctgattctttagaa |
221 |
Q |
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| T |
7583836 |
gcaaagaactcacttgtaaaaactctgcatatttcgaatgaccagtaaaagatcttccatttactctggtgctcattctttagaa |
7583752 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 7097584 - 7097661
Alignment:
| Q |
139 |
aaagaactcacttgcaaaaactctgcatatttcgaatgaccagtaaaagatcttccatttactttggtgctgattctt |
216 |
Q |
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| T |
7097584 |
aaagaactcacttgtaaaaactctgcatatttcgaataaccagtaaaagatctttcatttactctggtgctcattctt |
7097661 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 9622353 - 9622307
Alignment:
| Q |
139 |
aaagaactcacttgcaaaaactctgcatatttcgaatgaccagtaaa |
185 |
Q |
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| T |
9622353 |
aaagaactcacttgtaaaaactctgcatatttcgaataaacagtaaa |
9622307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 13614892 - 13614938
Alignment:
| Q |
139 |
aaagaactcacttgcaaaaactctgcatatttcgaatgaccagtaaa |
185 |
Q |
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|||||||||||||| |||||||||||||||||||||| | ||||||| |
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| T |
13614892 |
aaagaactcacttgtaaaaactctgcatatttcgaataaacagtaaa |
13614938 |
T |
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