View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_high_34 (Length: 234)
Name: NF21275_high_34
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_high_34 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 38964713 - 38964946
Alignment:
| Q |
1 |
ttcggacctcccaattcaaacttagcaccttcctaatgttttgcaaaagacttcaagccgtagctgaatccccttttgtcgaagtaatagtagagactac |
100 |
Q |
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| T |
38964713 |
ttcggacctcccaattcaaacttagcaccttactaatgttttgcaaaagactccaagccgcagttgaacccccttttgtcgaagtaatagtagagactac |
38964812 |
T |
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| Q |
101 |
taccgaagagtccacgtgaagctccaattttttaatcccacgaaaacgaacaattttcaaaccttcaaagattccccataattatgcaatatatgcattg |
200 |
Q |
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| T |
38964813 |
taccgaagagtccacgtgaagctccaattttttaatcccacgaaaacgagcaattttcaaaccttcaaagactccccataattatgcaatataagcattg |
38964912 |
T |
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| Q |
201 |
cagcaacacaaaccttttgagaaaccacacatcc |
234 |
Q |
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| T |
38964913 |
cagcaacacaaaccttttgagaaaccacacatcc |
38964946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 133914 - 133879
Alignment:
| Q |
1 |
ttcggacctcccaattcaaacttagcaccttcctaa |
36 |
Q |
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| T |
133914 |
ttcggacctcccaattcaaacttagcagcttcctaa |
133879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 42581857 - 42581725
Alignment:
| Q |
33 |
ctaatgttttgcaaaagacttcaagccgtagctgaatccccttttgtcgaagtaatagtagagactactaccgaagagtccacgtgaagctccaattttt |
132 |
Q |
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| T |
42581857 |
ctaatgttttacaaaagacttcaaaccgcaagtgatccccatttcgtcgaagtaatagtagatactactactcaaaagtccacgtgaagctccaatattt |
42581758 |
T |
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| Q |
133 |
taatcccacgaaaacgaacaattttcaaacctt |
165 |
Q |
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| T |
42581757 |
tattcccacgagaacgatcaattttcaaacctt |
42581725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 14793207 - 14793284
Alignment:
| Q |
116 |
gtgaagctccaattttttaatcccacgaaaacgaacaattttcaaaccttcaaagattccccataattatgcaatata |
193 |
Q |
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| T |
14793207 |
gtgaagctccaatttttgaatatcatgagaacgaaagattttcaaaccttcaaagactccccataattctgcaatata |
14793284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14793136 - 14793201
Alignment:
| Q |
1 |
ttcggacctcccaattcaaacttagcaccttcctaatgttttgcaaaagacttcaagccgtagctg |
66 |
Q |
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| T |
14793136 |
ttcggacctcccaattcaaactgagtatcttcctgatgttttacaaaagactccaagccgtcgctg |
14793201 |
T |
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