View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21275_high_8 (Length: 421)
Name: NF21275_high_8
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 38984372 - 38983963
Alignment:
| Q |
1 |
aagctctacattatgagccaagtatttggagacatcagattccgcttcctagaggctatcatcagaggctgaatcttcttcattatcatcaatatccctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38984372 |
aagctctacattatgagccaagtatttggagacatcagattccgcttcctggaggctatcattagaggctgaatcttcttcatcatcatcaatatccctc |
38984273 |
T |
|
| Q |
101 |
caaaatttcttcagaatttggacacttttgaggctagcttcagagtgtatgttagtggtctgcttccgaataactgtgctaacaggcaacttgtcacttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38984272 |
caaaatttcttcagaatttggacacttttgaggctagcttcagagtgtatgttagtggtctgcatccgaataactgtgctaacaggaaacttgtcacttg |
38984173 |
T |
|
| Q |
201 |
ttaaagaagtgtaataagtagtgataggttatggtatggggtgctgcacaactatgttattcttgtctgaaaacacagtattcaaggccatgtttggagc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38984172 |
ttaaagaagtgtaataagtagtgataggttatggtatggggtgctgcacaagtatgttattcttgtctgaaaacacagtattcaaggccacgtttggagc |
38984073 |
T |
|
| Q |
301 |
tatgatcaagctagtatccaaaaagttagtaacagttgcactcacacttttagctacaccagcaggctccaagatagcatgctgcatatcataggagctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38984072 |
tatgatcaagctagtatccaaaaagttagtaacagttgcactcacacttttagctacatcagcaggctccaagatagcatgctgcatatcataggagctg |
38983973 |
T |
|
| Q |
401 |
ttacttagtc |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
38983972 |
ttacttagtc |
38983963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 26 - 359
Target Start/End: Original strand, 50249691 - 50250018
Alignment:
| Q |
26 |
ttggagacatcagattccgcttcctagaggctatcatcagaggctgaatcttcttcattatcatcaatatccctccaaaatttcttcagaatttggacac |
125 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||| ||||||||||||||| ||| ||||||| |||| | | ||||||||| |||||| ||||| |
|
|
| T |
50249691 |
ttggagacatcaaattctgcttcctggaggctatca---gaggctgaatcttctacatcatcatca---tccccctataatttcttcggaatttagacac |
50249784 |
T |
|
| Q |
126 |
ttttgaggctagcttcagagtgtatgttagtggtctgcttccgaataactgtgctaacaggcaacttgtcacttgttaaagaagtgtaataagtagtgat |
225 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
50249785 |
ttttaaggctagcttcaaaatgtatgttagtggtctgcttctcaacaactgtgctaacagagtgcttgtcatttgttaaagaagtgtaagcagtagtgat |
50249884 |
T |
|
| Q |
226 |
aggttatggtatggggtgctgcacaactatgttattcttgtctgaaaacacagtattcaaggccatgtttggagctatgatcaagctagtatccaaaaag |
325 |
Q |
| |
|
||||| ||| ||| | |||||| || |||||||||||||||||| | | ||| |||||||||||| |||||||||||||||||||||| ||||||| || |
|
|
| T |
50249885 |
aggttgtggcatgagatgctgcccacttatgttattcttgtctgatatcccaggattcaaggccatctttggagctatgatcaagctagcatccaaagag |
50249984 |
T |
|
| Q |
326 |
ttagtaacagttgcactcacacttttagctacac |
359 |
Q |
| |
|
| ||||||| ||||||||||||| |||| |||| |
|
|
| T |
50249985 |
tgagtaacacatgcactcacacttctagccacac |
50250018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University