View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_10 (Length: 383)
Name: NF21275_low_10
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 342530 - 342901
Alignment:
| Q |
1 |
ttgcagccaacattaacaacttggccagggcagtcgtcagaaaatctgccactgcaatcagccatggcgccatcatggtcaatatatttgacaacactgg |
100 |
Q |
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| T |
342530 |
ttgcagccaacattaacaacttggccagggcagttgtcagaaaatctgccactgcaatcagccatggcgccatcatggtcaatatatttgacaacactgg |
342629 |
T |
|
| Q |
101 |
atgcaacaaatatttttctctattccaacatgaaaatatccaaactatagtgttataactccgttccatcgca---aaat--attcttggaaaaagagat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| | || | | ||| |
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| T |
342630 |
atgcaacaaatatttttctctattccaacatgaaaatatccaaactatagtgttataactccgttctattccatgtaaatccactccattccatcgcgat |
342729 |
T |
|
| Q |
196 |
tgtcaacacaataaagtattcttcgtgttttccctttatcttttttcccatctctctggaaacttggaatttgtttctgattcctaacagatacctcnnn |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
342730 |
tgtcaacacaataaagtattcttcgtgttttccctttatcttttttctcatctctctggaaacttggaatttgtttctgattcctaacagataccccaaa |
342829 |
T |
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| Q |
296 |
nnnnncagcttttgattttcatcactcggcagtagtactacaataaaatcagaaacactcaacagatgaaaa |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
342830 |
aaaaacagcttttgattttcatcactcggcagtagtactacaataaaatcagaaacactcaacagatgaaaa |
342901 |
T |
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