View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_11 (Length: 358)
Name: NF21275_low_11
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 2622124 - 2622270
Alignment:
| Q |
10 |
ataatactactatgcttttaagctcgaagagcatacaaagtaaaactgatgtaagagtctttaaatcggctccttagatgcaaatcggaagtaaaacaaa |
109 |
Q |
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| T |
2622124 |
ataatactactatgcttttaagctcgaagagcgtacaaagtaaaactgatgtaagagtctttaaatcggctccttagatgcaaatcggaagtaaaacaaa |
2622223 |
T |
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| Q |
110 |
attcaagttcaagtctataacaatcatgagcacattggatactattt |
156 |
Q |
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| T |
2622224 |
attcaagttcaagtctataacaatcatgagcacattggatactattt |
2622270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 2466499 - 2466426
Alignment:
| Q |
78 |
gctccttagatgcaaatcggaagtaaaacaaaattcaa-gttcaagtctataacaatcatgagcacattggata |
150 |
Q |
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| T |
2466499 |
gctccttagatgcaaattgcatgtaaaacagaattcaaagttcaagtctataacaaacatgaacacgttggata |
2466426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 19140121 - 19140073
Alignment:
| Q |
103 |
aaacaaaattcaagttcaagtctataacaatcatgagcacattggatac |
151 |
Q |
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| T |
19140121 |
aaacaaaattaaagttcaagtctataacaaacatgagcatgttggatac |
19140073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 344
Target Start/End: Original strand, 2622338 - 2622367
Alignment:
| Q |
315 |
tgttacatttaagatcaagcattgaggagg |
344 |
Q |
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| T |
2622338 |
tgttacatttaagatcaagcattgaggagg |
2622367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 13901229 - 13901181
Alignment:
| Q |
103 |
aaacaaaattcaagttcaagtctataacaatcatgagcacattggatac |
151 |
Q |
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| T |
13901229 |
aaacaaaattaaagttcaagtctataacaaacatgagcatgttggatac |
13901181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 13575308 - 13575270
Alignment:
| Q |
103 |
aaacaaaattcaagttcaagtctataacaatcatgagca |
141 |
Q |
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| T |
13575308 |
aaacaaaattaaagttcaagtctataacaaacatgagca |
13575270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 24550522 - 24550570
Alignment:
| Q |
103 |
aaacaaaattcaagttcaagtctataacaatcatgagcacattggatac |
151 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
24550522 |
aaacaaaattaaagttcaagtctataacaaacatgagcatgttggatac |
24550570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 23966201 - 23966163
Alignment:
| Q |
103 |
aaacaaaattcaagttcaagtctataacaatcatgagca |
141 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| |
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| T |
23966201 |
aaacaaaattaaagttcaagtctataacaaacatgagca |
23966163 |
T |
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