View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_12 (Length: 356)
Name: NF21275_low_12
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 39088036 - 39088230
Alignment:
| Q |
20 |
actctctaatgtttcctgat---gaatgtgagtgttgcttagatgatttaggcaagggcaactcatttgtgtcctcttcaacattcactgatcttgaacc |
116 |
Q |
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| T |
39088036 |
actctctaatgtttcctgatgatgaatgtgagtgttgcttagatgatttaggcaagggcaactcatttgtgtcctcttcaacattcactgaccttgaacc |
39088135 |
T |
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| Q |
117 |
ttttttcattgaatctgcataggaattaacaacattttcagtaaaataaatatacaaatggttgaaaagccaaactaactagttatagaattcag |
211 |
Q |
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| T |
39088136 |
ttttttcattgaatctgcataggaattaacaacattttcagtaaaataaatatacaaatggttgaaaagccaaactaactagttatagaattcag |
39088230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 39088334 - 39088410
Alignment:
| Q |
250 |
actacattttgtatgtcaaaaattaagcatgaaacataacgtgtacctaaggagactcggggttctgaatcatcagc |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
39088334 |
actacattttgtatgtcaaaaattaagcatgaaacataacgcgtacctaaggagattcggggttctgaatcatcagc |
39088410 |
T |
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