View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_13 (Length: 355)
Name: NF21275_low_13
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 161 - 344
Target Start/End: Complemental strand, 31413223 - 31413040
Alignment:
| Q |
161 |
tgttaatgctgggttaattgcatttactcttatttgacttgcacggttcaccacattggtttgaaattcaaattttccccttccatattccaatggtgca |
260 |
Q |
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| T |
31413223 |
tgttaatgctgggttaattgcatttactcttatttgacttgcacggttcaccacattggtttgaaattcaaattttccccttccatattccaatggtgca |
31413124 |
T |
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| Q |
261 |
ttaaatgtgtgtatcaaaccaatatgatatcttgctccacatgatcaaatctttctcaaaacaaaacttctctttctctttctt |
344 |
Q |
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| T |
31413123 |
ttaaatgtgtgtatcaaaccaatatgatatcttgctccacatgatcatatctttctcaaaacaaaacttctctttctctttctt |
31413040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 38014510 - 38014642
Alignment:
| Q |
161 |
tgttaatgctgggttaattgcatttactcttatttgacttgcacggttca-ccacattggtttgaaattcaaattttccccttccatattccaatggtgc |
259 |
Q |
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| T |
38014510 |
tgttaatgctgggttgattgcatttattgttatttgacttgcacggttcaaccacattggtttgaaattcaaattt-cctcttccatattccaatggcgc |
38014608 |
T |
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| Q |
260 |
attaaatgtgtgtatcaaaccaatatgatatctt |
293 |
Q |
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| T |
38014609 |
attaaatgtgtgtatcaaaccaatatgatatctt |
38014642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 7608292 - 7608256
Alignment:
| Q |
20 |
cctcagcccttggatctaatctgtttgccattttttc |
56 |
Q |
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| T |
7608292 |
cctcagcccttggatctaatctgtttgccattttttc |
7608256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 31771280 - 31771244
Alignment:
| Q |
20 |
cctcagcccttggatctaatctgtttgccattttttc |
56 |
Q |
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| T |
31771280 |
cctcagcccttggatctaatctgtttgccagtttttc |
31771244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 31771349 - 31771313
Alignment:
| Q |
20 |
cctcagcccttggatctaatctgtttgccattttttc |
56 |
Q |
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| T |
31771349 |
cctcagcccttggatctaatctgtttgcaattttttc |
31771313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 7608360 - 7608325
Alignment:
| Q |
21 |
ctcagcccttggatctaatctgtttgccattttttc |
56 |
Q |
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| T |
7608360 |
ctcagcccttggatctaatctgtttgcaattttttc |
7608325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 2769786 - 2769837
Alignment:
| Q |
276 |
aaaccaatatgatatcttgctccacatgatcaaatctttctcaaaacaaaactt |
329 |
Q |
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| T |
2769786 |
aaaccaataagatatcttgctccacatgatcatatc--tctcaaaacataactt |
2769837 |
T |
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