View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_14 (Length: 354)
Name: NF21275_low_14
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 1178533 - 1178222
Alignment:
| Q |
12 |
atgaacaaaattaagctaacatagaagaaaatgagccaaacgtacaagcctgataaaatgaaatgaaagccggcctnnnnnnnncaaggaatgaatgcca |
111 |
Q |
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| T |
1178533 |
atgaacaaaattaagctaacatagaagaaaatgagccaaacgtacaagcctgataaaatgaaatgaaagccggcctaaaaaaaacaaggaatgaaagcca |
1178434 |
T |
|
| Q |
112 |
aaaagaaattaagctaacttaaaaagaaattaagctgagctaacaaagcacatcatagaagcaaattcaattcgaaatcctttcaattttgcattggtaa |
211 |
Q |
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| T |
1178433 |
aaaagaaattaagctgagctaacaaagcatt-------------gtagtacatcatagaagcaatttcaatttgaaatcctttcaattttgcattggtaa |
1178347 |
T |
|
| Q |
212 |
atgccttttggaattaggactccaagccaaaaaagacttatacaagtaattgttgtattcaatgaaatcattcatcttaaatatcttgaactggttgtgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1178346 |
atgccttttggaattaggactccaagccaaaaaagacttatacaagtaattgttgtattcaatgaaatcattcatcttaaataccttgaactggttgtgt |
1178247 |
T |
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| Q |
312 |
ttaatttatgattatgcgaatgagc |
336 |
Q |
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| T |
1178246 |
ttaatttatgattatgcgaatgagc |
1178222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 35050195 - 35050081
Alignment:
| Q |
163 |
atcatagaagcaaattcaattcgaaatcctttcaattttgcattggtaaatgccttttggaattaggactccaagccaaaaaagacttatacaagtaatt |
262 |
Q |
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| T |
35050195 |
atcatagaagcaatttcaatttgaaattctttgaattttgcattggtaaatgctttttggaattgagactcaaagcc-aaaaagactaatacaagcaatt |
35050097 |
T |
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| Q |
263 |
gttgtattcaatgaaa |
278 |
Q |
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| T |
35050096 |
gttgtattaaatgaaa |
35050081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 14663432 - 14663475
Alignment:
| Q |
199 |
tttgcattggtaaatgccttttggaattaggactccaagccaaa |
242 |
Q |
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| T |
14663432 |
tttgcattggtaaatgccttttggaattgagactcaaagccaaa |
14663475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 8533440 - 8533522
Alignment:
| Q |
161 |
acatcatagaagcaaattcaattcgaaatcctttcaattttgcattggtaaatgccttttggaattaggactccaagccaaaa |
243 |
Q |
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| T |
8533440 |
acatcatagaagaaacttctacttgaaattctttgaattttgcattggtaaatgatttttggaattgtgattcaaagccaaaa |
8533522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 26304361 - 26304281
Alignment:
| Q |
163 |
atcatagaagcaaattcaattcgaaatcctttcaattttgcattggtaaatgccttttggaattaggactccaagccaaaa |
243 |
Q |
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|||||||| |||| ||| | | ||||| |||| |||||||||||||||||| |||||||||| ||||| ||||||||| |
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| T |
26304361 |
atcatagaggcaacttctacttgaaattctttgaattttgcattggtaaataatttttggaattgtgactcaaagccaaaa |
26304281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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