View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_18 (Length: 298)
Name: NF21275_low_18
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 4133054 - 4133336
Alignment:
| Q |
19 |
ccatcggtacttatcaatggacaaatgatcacatgagtatcatgtcgaggtgagtcaccaaaacatatacttctttcaattttcatgttataaaagtcac |
118 |
Q |
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| T |
4133054 |
ccatcggtacttatcaatggacaaatgatcacatgagtatcatgtcgaggtgagtcaccaaaacatatacttctttcaattttcatgttataaaagtcac |
4133153 |
T |
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| Q |
119 |
caacaaatattttattttcatacatttgcc------------ctttatgtctttcaactttgactatgtttcagtgtttcatttcatgattgtgtgtttg |
206 |
Q |
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| T |
4133154 |
caacaaatattttattttcatacatttgccctatagtatgccctttatgtctttcaactttgactatgtttcagtgtttcatttcatgattatgtgtttg |
4133253 |
T |
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| Q |
207 |
gtgattgtttatttttcagtgacaattctccacgatatctcttagtctcgcagattctcaacttcgacactcctttgcttctc |
289 |
Q |
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| T |
4133254 |
gtgattgtttatttttcagtgacaattctccacgatatctcttagtctcgcagattctcaacttcgacactcttttgattctc |
4133336 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 8423632 - 8423678
Alignment:
| Q |
232 |
ttctccacgatatctcttagtctcgcagattctcaacttcgacactc |
278 |
Q |
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| T |
8423632 |
ttctccacaatatctcttagtctcacaaattctcatcttcgacactc |
8423678 |
T |
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