View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21275_low_19 (Length: 295)

Name: NF21275_low_19
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21275_low_19
NF21275_low_19
[»] chr7 (3 HSPs)
chr7 (18-282)||(38984469-38984724)
chr7 (71-246)||(10582923-10583097)
chr7 (133-287)||(356865-357011)
[»] chr1 (3 HSPs)
chr1 (129-246)||(16465528-16465646)
chr1 (156-246)||(50249155-50249246)
chr1 (19-73)||(48942357-48942411)
[»] chr5 (1 HSPs)
chr5 (185-274)||(1265404-1265493)
[»] chr4 (1 HSPs)
chr4 (78-144)||(6762552-6762618)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 38984724 - 38984469
Alignment:
Q  18 cttatacagccatagaagagaagttacacaagatcaaaacagaacttaagctagagtttgaattccaattgtgattgtactattagcatgttgcaaccta 117  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38984724 cttatacagccgtagaacagaagttacacaagatcaaaacagaacttaagctagagtttgaattccaattgtgattgtactattagcatgttgcaaccta 38984625  T
Q  118 ttcttcttttacctgctgaagcccttttacacaagagcaaaagaagacattccctagcaactaagggtctaaaacttttggttttgaaataccctttttg 217  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  38984624 ttattcttttacctgctgaagcccttttacacaggagcaaaagaagacattccctgacaactaagggtctaaaacttttggttttgaaataccctttttg 38984525  T
Q  218 gaatgggtgatgatgccctctgaatccgctaaatccgcaggattagcttgtgtgatatgttttct 282  Q
    ||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  38984524 gaacgggtgatgatgccctctgaat---------ccgcaggattagcttgtgtgatatgttttct 38984469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 246
Target Start/End: Complemental strand, 10583097 - 10582923
Alignment:
Q  71 gagtttgaattccaattgtgattgtactattagcatgttgcaacctattcttcttttacctgctgaagcccttttacacaagagcaaaagaagacattcc 170  Q
    |||||||||  ||| ||||| ||||||  ||||  || |||| ||||||||| ||||  |||||||| |||||||||||| |||| || |||||||||||    
T  10583097 gagtttgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgctgaaacccttttacacaggagcgaaggaagacattcc 10583000  T
Q  171 ctag-caactaagggtctaaaacttttggttttgaaataccctttttggaatgggtgatgatgccctctgaatccgc 246  Q
    |||| ||||||||| || |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||    
T  10582999 ctagacaactaaggttccaaaacttttggtttggaaatacccattttggaacgggtgatgatgccctctgaatccgc 10582923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 287
Target Start/End: Complemental strand, 357011 - 356865
Alignment:
Q  133 ctgaagcccttttacacaagagcaaaagaagacattccctagc-aactaagggtctaaaacttttggttttgaaataccctttttggaatgggtgatgat 231  Q
    ||||| |||||||||||| |||| || |||||||||||||||  |||||| | || |||||||||||||| |||||||||| ||||||| ||||| ||||    
T  357011 ctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacgggtgttgat 356912  T
Q  232 gccctctgaatccgctaaatccgcaggattagcttgtgtgatatgttttctctgct 287  Q
    |||||||||||         ||||| ||||||||||||||||||||||| ||||||    
T  356911 gccctctgaat---------ccgcatgattagcttgtgtgatatgttttttctgct 356865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 16465646 - 16465528
Alignment:
Q  129 cctgctgaagcccttttacacaagagcaaaagaagacattccctagc-aactaagggtctaaaacttttggttttgaaataccctttttggaatgggtga 227  Q
    ||||||||| |||||||| |||||| ||||||| ||||||  ||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||    
T  16465646 cctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaacgagtga 16465547  T
Q  228 tgatgccctctgaatccgc 246  Q
    |||||||||||||||||||    
T  16465546 tgatgccctctgaatccgc 16465528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 50249155 - 50249246
Alignment:
Q  156 aaaagaagacattccctag-caactaagggtctaaaacttttggttttgaaataccctttttggaatgggtgatgatgccctctgaatccgc 246  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  50249155 aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctttgaatccgc 50249246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 48942357 - 48942411
Alignment:
Q  19 ttatacagccatagaagagaagttacacaagatcaaaacagaacttaagctagag 73  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  48942357 ttatacagccatagaacagaagttacacaagatcaaaacagaacttaagccagag 48942411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 1265404 - 1265493
Alignment:
Q  185 tctaaaacttttggttttgaaataccctttttggaatgggtgatgatgccctctgaatccgctaaatccgcaggattagcttgtgtgata 274  Q
    ||||||||||||||||||| ||| || ||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  1265404 tctaaaacttttggttttgtaatgccgtttttagaacgggtgatgatgccctctgaatccgttgaatccgcaggattagcttgtgtgata 1265493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 6762552 - 6762618
Alignment:
Q  78 aattccaattgtgattgtactattagcatgttgcaacctattcttcttttacctgctgaagcccttt 144  Q
    ||||||| ||||| ||||||  ||||| |||||||||||||||||||||| ||||||||| ||||||    
T  6762552 aattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaacccttt 6762618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University