View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21275_low_22 (Length: 279)

Name: NF21275_low_22
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21275_low_22
NF21275_low_22
[»] chr3 (2 HSPs)
chr3 (12-263)||(41107929-41108181)
chr3 (132-188)||(22997921-22997977)
[»] chr2 (2 HSPs)
chr2 (159-206)||(17409711-17409758)
chr2 (136-189)||(13848650-13848703)
[»] chr4 (1 HSPs)
chr4 (166-204)||(8850129-8850167)
[»] chr1 (1 HSPs)
chr1 (151-207)||(30493164-30493221)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 41107929 - 41108181
Alignment:
Q  12 ggagcacagagatcatcatattagacgaaaagcaaccacacacgtgagtttgacacaacccaaaactttaagacgttatgtctatgggtaatctcacnnn 111  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  41107929 ggagcactgagatcatcatattggacgaaaagcaactacacacgtgagtttgacacaacccaaaactttaagacgttatgtctatgggtaatctcacttt 41108028  T
Q  112 nnnnnnn-aaggaatgggtaatctcacttatatggtggtcaacattcacttttctattaaatgtgagactcttactcacacttaaaacaccaacaaaaat 210  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108029 ttttttttaaggaatgggtaatctcacttatatggtggtcaacattcacttttctattaaatgtgagactcttactcacacttaaaacaccaacaaaaat 41108128  T
Q  211 aaaatggataaaaataatttagctttatttttacaagtgcatcatatgttatg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108129 aaaatggataaaaataatttagctttatttttacaagtgcatcatatgttatg 41108181  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 22997921 - 22997977
Alignment:
Q  132 tctcacttatatggtggtcaacattcacttttctattaaatgtgagactcttactca 188  Q
    |||||||||||  | | |||||||| ||||||| ||| |||||||||||||||||||    
T  22997921 tctcacttataaagagctcaacatttacttttcaattcaatgtgagactcttactca 22997977  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 17409711 - 17409758
Alignment:
Q  159 cttttctattaaatgtgagactcttactcacacttaaaacaccaacaa 206  Q
    |||||| ||||||||||||||||||||||||| |||| | ||||||||    
T  17409711 cttttccattaaatgtgagactcttactcacatttaatataccaacaa 17409758  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 13848703 - 13848650
Alignment:
Q  136 acttatatggtggtcaacattcacttttctattaaatgtgagactcttactcac 189  Q
    ||||||||| ||||||||||| ||||||   ||||||||| |||||||||||||    
T  13848703 acttatatgttggtcaacattaactttttccttaaatgtgggactcttactcac 13848650  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 8850129 - 8850167
Alignment:
Q  166 attaaatgtgagactcttactcacacttaaaacaccaac 204  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  8850129 attaaatgtgagactcttactcacacttgaaataccaac 8850167  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 30493221 - 30493164
Alignment:
Q  151 aacattcac-ttttctattaaatgtgagactcttactcacacttaaaacaccaacaaa 207  Q
    ||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||| ||||    
T  30493221 aacattcaccttttcaattcaatgtgaaactcttactcacacttaaaataccagcaaa 30493164  T

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