View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_28 (Length: 252)
Name: NF21275_low_28
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 923812 - 923692
Alignment:
| Q |
1 |
ctagggtttacaccggctaattatttgtgtgagatgcgacctaatttttaccaactgaatcaaccttttcgttaattatcatgttcattttttgccatca |
100 |
Q |
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| T |
923812 |
ctagggtttacaccggctaattatttgtgtgagatgcgacctaatttttaccaactgaatcaaccttttcgttaattatcatgttcattttttgccatca |
923713 |
T |
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| Q |
101 |
aatttagcttctctctttatc |
121 |
Q |
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| T |
923712 |
aatttagcttctctctttatc |
923692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 915759 - 915646
Alignment:
| Q |
5 |
ggtttacaccggctaattatttgtgtgagatgcgacctaatttttaccaactgaatcaaccttttcgttaattatcatgttcattttttgccatcaaatt |
104 |
Q |
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| T |
915759 |
ggtttacaccggctgattatttgtgtgagatgcgacctaatttttatcaactgaatcaactttttcgttaattatcatgttcattttttcccatcaaatt |
915660 |
T |
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| Q |
105 |
tagcttctctcttt |
118 |
Q |
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| T |
915659 |
tggcttctctcttt |
915646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 909208 - 909126
Alignment:
| Q |
28 |
tgtgagatgcgacctaatttttaccaactgaatcaaccttttcgttaattatcatgttcattttttgccatcaaatttagctt |
110 |
Q |
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| T |
909208 |
tgtgagatgcgacctaatttttaccaactgaatcaacttttacgttaattatcacatgcagattttgctatcacatttagctt |
909126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 242
Target Start/End: Complemental strand, 915543 - 915512
Alignment:
| Q |
211 |
gtatctactaacttgggtgaaggatatctgtg |
242 |
Q |
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| T |
915543 |
gtatctactaacttgggtgaaggatatctgtg |
915512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 242
Target Start/End: Complemental strand, 923602 - 923571
Alignment:
| Q |
211 |
gtatctactaacttgggtgaaggatatctgtg |
242 |
Q |
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| T |
923602 |
gtatctactaacttgggtgaaggatatctgtg |
923571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 909005 - 908977
Alignment:
| Q |
214 |
tctactaacttgggtgaaggatatctgtg |
242 |
Q |
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| T |
909005 |
tctactaacttgggtgaaggatatctgtg |
908977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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