View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_30 (Length: 240)
Name: NF21275_low_30
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 41107602 - 41107799
Alignment:
| Q |
32 |
aatgaaaagttgttgcattatgaggggagtcaggaatcgtcacatttactcaagagcaattacataagtgtgtttgacaacacatcttttctgaaagtga |
131 |
Q |
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| T |
41107602 |
aatgaaaagttgttgcattatgaggggagtcaggaatcgtcacatttactcaagagcaatcacataagtg-----------acatcttttctgaaagtga |
41107690 |
T |
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| Q |
132 |
aatctaaaagtaaaataagggatttgttttgctggaaaattgttaggtaatgagggtagacctatggacatcacaatgggtcaagtttataggtacgcca |
231 |
Q |
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| T |
41107691 |
aatctaaaagtaaaataagggatttgttttgctggaaaattgttaggtaatgagggtagccctatggacatcacactgggtcaagtttatagatacgcca |
41107790 |
T |
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