View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_34 (Length: 236)
Name: NF21275_low_34
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 15680139 - 15680235
Alignment:
| Q |
20 |
ctaagctttgcaagaacttcaaaattcttccatatgtttttgttcaaaatttcttaacaggaatgagcgaaaatatatggatgcaatatggctcttg |
116 |
Q |
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| T |
15680139 |
ctaagctttgcaaaaactttaaaattcttccatttgtttttgttcaaaatttcttaacaggaatgagcgaaaacagatgggtgcaatatcgctcttg |
15680235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 15680355 - 15680458
Alignment:
| Q |
124 |
tataagtttaaatagat-aacgaactaataaaacaataaaaat------tcaaattttaatatataagtacatacatttctttcctcttatcttttacat |
216 |
Q |
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| T |
15680355 |
tataagtttaaataaattaacgaactaataaaaccatgaaaattcaaattcaaattttaatttataagtacatacatttctttcctcttatcttttacat |
15680454 |
T |
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| Q |
217 |
tcat |
220 |
Q |
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|||| |
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| T |
15680455 |
tcat |
15680458 |
T |
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