View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_38 (Length: 217)
Name: NF21275_low_38
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 21389558 - 21389730
Alignment:
| Q |
18 |
gtatccttatcttgtgtgcttacatttgcatgttcacttattttcaattgcgattgttacttgtgttgctataacttgtaattgtccacttattttactt |
117 |
Q |
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| T |
21389558 |
gtatccttatcttgtgtgcttacatttgcatgttcacttgttttcaattgcgattgttacttgtgttgttataacttgtaattgtccacttattttactt |
21389657 |
T |
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| Q |
118 |
aaattacttgtgttggttactatcc-ttttgacgttttcaaaggagggagaaatggttggatgatgtccttgt |
189 |
Q |
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| T |
21389658 |
aaattacttgtgttggttactatcctttttgacgttttcaaagggggaagaaatggttggatggtgtccttgt |
21389730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 14972033 - 14971988
Alignment:
| Q |
40 |
catttgcatgttcacttattttcaattgcgattgttacttgtgttg |
85 |
Q |
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| T |
14972033 |
catttgcatgttcacttgttttcaattgcgattgtaaattgtgttg |
14971988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 15401509 - 15401464
Alignment:
| Q |
40 |
catttgcatgttcacttattttcaattgcgattgttacttgtgttg |
85 |
Q |
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| T |
15401509 |
catttgcatgttcacttgttttcaattgcgattgtaaattgtgttg |
15401464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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