View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21275_low_4 (Length: 495)
Name: NF21275_low_4
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 31 - 275
Target Start/End: Complemental strand, 21393221 - 21392977
Alignment:
| Q |
31 |
aattcaagaaaagttgaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacac |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21393221 |
aattcaagaaaagttgaatcgattcagtagtgatatgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctgatgatacgattcaaacac |
21393122 |
T |
|
| Q |
131 |
tggtgaatcgattcatacactgaaaaatgatgaataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacat |
230 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21393121 |
tggtgaatcgattcagacactgaaaaatgatgaataaggctaagttccatatgtgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacat |
21393022 |
T |
|
| Q |
231 |
agttgctaggtgatgtaacatgactatatgctagagaacaaggag |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21393021 |
agttgctaggtgatttaacatgactatatgctagagaacaaggag |
21392977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 336 - 470
Target Start/End: Complemental strand, 21392915 - 21392782
Alignment:
| Q |
336 |
ttatataagctttaatctccctctttttgatgatctcaaaacaagttgatgatgtgatagctcccccttaaacatagcattcaaaagaaacagcaaacac |
435 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21392915 |
ttatataagcttcaatctccctctttttgatgctctcaaaacaagttgatgatgtgatagctccccctgaaacatagcattcaaaagaaacagcaaacac |
21392816 |
T |
|
| Q |
436 |
aagcaatagaaagaaacatagggaaatagcacaag |
470 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21392815 |
aagcaatagaaagaaacataggg-aatagcacaag |
21392782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 58 - 270
Target Start/End: Complemental strand, 16973551 - 16973340
Alignment:
| Q |
58 |
tagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacactggtgaatcgattcatacactgaaaaa |
157 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||| |||||| |||| | ||||| ||||| |
|
|
| T |
16973551 |
tagtgatacaattcaaaagcttgtgaatcgattcattagaagtcagagacttctgatgatatgattcaaacactagtgaattgattaagacact-aaaaa |
16973453 |
T |
|
| Q |
158 |
tgatgaataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacatagttgctaggtgatgtaacatgactat |
257 |
Q |
| |
|
| | | ||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||||| | ||| |||||||| |
|
|
| T |
16973452 |
ggtaaattttggctaagtttcatatatgtgaacaatgcacatgacaccaatgaatcctgggacaatgagacatagatgctaggtgctttaatatgactat |
16973353 |
T |
|
| Q |
258 |
atgctagagaaca |
270 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16973352 |
atgctagagaaca |
16973340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 25921426 - 25921179
Alignment:
| Q |
22 |
ccatgatacaattcaagaaaagttgaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacga |
121 |
Q |
| |
|
||||||||| ||||| | ||| ||||||||||| || |||||||| ||||||||||| ||||| || |||| | ||||||| |||||| ||||||||| |
|
|
| T |
25921426 |
ccatgatacgattcaggcaaacttgaatcgattatgttgtgatacgattcaaaaacttgtgaatcatatcattggcagtcagagacttctgatgatacga |
25921327 |
T |
|
| Q |
122 |
ttcaaacactggtgaatcgattcatacactga-aaaatgatga-ataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggt |
219 |
Q |
| |
|
| ||| ||||||||||| |||| | ||| |||| ||||| || ||||||||| || |||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
25921326 |
t-caaccactggtgaattgatttagg---tgataaaaagatgagatttggctaagtttcaaatatgtaaacaatgcacatgacattaatgaatcctagga |
25921231 |
T |
|
| Q |
220 |
caatgagacatagttgctaggtgatgtaacatgactatatgctagagaacaa |
271 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
25921230 |
caatgagacatagttgctaggtgctttaacatgactatatgctagaaaacaa |
25921179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 24699438 - 24699484
Alignment:
| Q |
225 |
agacatagttgctaggtgatgtaacatgactatatgctagagaacaa |
271 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
24699438 |
agacatagttgctaggtgatttaacatgactttatgctatagaacaa |
24699484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 50 - 271
Target Start/End: Complemental strand, 26022875 - 26022655
Alignment:
| Q |
50 |
cgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacactggtgaatcgattcataca |
149 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||| ||| |||| ||||||||| |||||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
26022875 |
cgattcagttgtgatacgattcaaaaacttgtgaatcgtatcattggaagtcagagacttctgattatacgattcaaacactggtgaatcgattcggtca |
26022776 |
T |
|
| Q |
150 |
ctgaaaaatgatga-ataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacatagttgctaggtgatgtaa |
248 |
Q |
| |
|
| |||| ||||| ||| ||||||||| || |||||| ||| || |||| ||||| ||||||| ||||| ||| || |||||||||||||||| | ||| |
|
|
| T |
26022775 |
at--aaaaagatgagatatggctaagtttcaaatatgtaaaccattcacatgacactaatgaattctaggacaacgatacatagttgctaggtgctttaa |
26022678 |
T |
|
| Q |
249 |
catgactatatgctagagaacaa |
271 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
26022677 |
catgactatatgctagaaaacaa |
26022655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 24511845 - 24511995
Alignment:
| Q |
114 |
tgatacgattcaaacactggtgaatcgattcatacactgaaaaatgatgaataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatc |
213 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||| ||||||||||| |||||||| ||||||||| ||||||||| | |||||||| |||||||||||||| |
|
|
| T |
24511845 |
tgatacgattcaaaaactagtaaattgattcagacactgaaaaa-gatgaatatggctaagtttcatatatgtaagaaatgcacaggacaccaatgaatc |
24511943 |
T |
|
| Q |
214 |
ctaggtcaatgagacatagttgctaggtgatgtaacatgactatatgctaga |
265 |
Q |
| |
|
|| | ||||| ||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
24511944 |
atatgaaaatgatacatagttgttaggtgctttaacatgactatatgctaga |
24511995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 257
Target Start/End: Original strand, 25917749 - 25917945
Alignment:
| Q |
60 |
gtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacactggtgaatcgattcatacactgaaaaatg |
159 |
Q |
| |
|
|||||||| ||||||||||| ||||| || |||| |||||||||| ||||| ||||||||||||| | ||| |||||||||||| | | |||| | |
|
|
| T |
25917749 |
gtgatacgattcaaaaacttgtgaatcgtttcattagaagtcagaaccttcttatgatacgattcacatacttatgaatcgattcagtga--gtaaaaag |
25917846 |
T |
|
| Q |
160 |
atga-ataaggctaagttccatatatgtgaacaatgcacaagacaccaatgaatcctaggtcaatgagacatagttgctaggtgatgtaacatgactat |
257 |
Q |
| |
|
|||| ||| || |||||| || |||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||| | |||| | ||||| |||||| |
|
|
| T |
25917847 |
atgagatatggttaagtttcaaatatgtaaacaatgcacatgacacaaataaatcctagaataatgagacatagttgttgggtgctttaacaagactat |
25917945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 19221004 - 19220924
Alignment:
| Q |
45 |
tgaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattca |
125 |
Q |
| |
|
|||||||||||| ||||||||| |||||| || ||||| ||| |||| ||||||||| || ||||||||||||||||| |
|
|
| T |
19221004 |
tgaatcgattcacaagtgatacgactcaaaaggttgtgaatcgtatcattggaagtcagagacctctaatgatacgattca |
19220924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 24660157 - 24660058
Alignment:
| Q |
46 |
gaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaacactggtgaatcgattca |
145 |
Q |
| |
|
||||||||||| | ||||| ||||||||| | ||||| || |||||||||||||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
24660157 |
gaatcgattcaatggtgatgcgtttcaaattttggtgaatcgtttcatttgaagtcagaaacttcagatgatacgattcaaagtatgatgaatcgattca |
24660058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 14971774 - 14971843
Alignment:
| Q |
344 |
gctttaatctccctctttttgatgatctcaaaacaagttgatgatgtgatagctcccccttaaacatagcat |
415 |
Q |
| |
|
|||| |||||||| |||||||| ||| ||||| |||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
14971774 |
gcttcaatctccc-ctttttga-gatgtcaaaccaagttgatgatgtgataactccccctgaaatatagcat |
14971843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 15401250 - 15401319
Alignment:
| Q |
344 |
gctttaatctccctctttttgatgatctcaaaacaagttgatgatgtgatagctcccccttaaacatagcat |
415 |
Q |
| |
|
|||| |||||||| |||||||| ||| ||||| |||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
15401250 |
gcttcaatctccc-ctttttga-gatgtcaaaccaagttgatgatgtgataactccccctgaaatatagcat |
15401319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 25220471 - 25220389
Alignment:
| Q |
45 |
tgaatcgattcagtagtgatacgtttcaaaaacttttgaattgtaccatttgaagtcagaaacttctaatgatacgattcaaa |
127 |
Q |
| |
|
|||||| ||||| |||||| || |||||| |||||||| || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25220471 |
tgaatcaattcaagagtgatgcgattcaaacttttttgaatcgtttcatttgaagtcagaaacttcagatgatacgattcaaa |
25220389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University