View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_5 (Length: 480)
Name: NF21275_low_5
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 22 - 455
Target Start/End: Complemental strand, 44227050 - 44226615
Alignment:
| Q |
22 |
atactattataccttcaattccctgaagaattttcttgactctttttgtgcagccatcgcagtggatcaagacttttaaaacccacgtctgcagaatata |
121 |
Q |
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| T |
44227050 |
atactattataccttcaattccctgaagaattttcttgactctttttgtgcagccatcgcagtggatcaagacttttaaaacccatgtctgcagaatata |
44226951 |
T |
|
| Q |
122 |
tataattagttactaccaagttgagccaagaatatattatataaatgcacagattcaggaattaaagtgt--ttaattatgattacctgatacttgagtg |
219 |
Q |
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| T |
44226950 |
tataattagttactaccaagttgagccaagaatatataatataaatgcacaggttcaggaattaaagtgtgtttaattatgattacctgatacttgagtg |
44226851 |
T |
|
| Q |
220 |
tttctaatccgggaggaacttgttgatcagcagctggtttggctgcagccatttgaaatgaagtttggttggtaagtagctagcttagtggagtggaaaa |
319 |
Q |
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| T |
44226850 |
tttctaatccgggaggaacttgttgatcagcagctggtttgtctgcagccatttgaaatgaagtttggttggtaagtagctagcttagtggagtggaaaa |
44226751 |
T |
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| Q |
320 |
taagggacgaagaaagcttgtctaagtgtaagtggggtgtgtttgttggttttgccaatgcttttaaaggatgtgaggaacccatgtacatgtatagtac |
419 |
Q |
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| T |
44226750 |
taagggacgaagaaagcttgtctaagtgtaagtggggtgtgtttgttggttttgccaatgcttttaaaggatgtgaggaacccatgtacatgtatagtac |
44226651 |
T |
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| Q |
420 |
tagtactattaataaatgaattctgctctccaccca |
455 |
Q |
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| T |
44226650 |
tagtactattaataaatgaattctgctctccaccca |
44226615 |
T |
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